Content of the package...

Bacterium_running.m : Simulate the motion of a single bacterium, to test the correctness of the model

L.m : Calculate the concentration field

Motor.m : Calculate the new state of the motor

ODE.m : The transition function to take the L(x) to pathway(y, L)

Pathway.m : The pathway differential equation

Steady_state.m : Calculate the concentration of molecules in chemotaxis pathway at steady state

Plot.m : Plot the trace of the bacterium and CheYp

Bacterium_parameter_test.m : Another version of bacterium_running.m for parameter test

Parameter_test_single_core.m : Test some parameters for the CPU has a single core

Parameter_test_multi_core.m : Test some parameters with multi core to improve the efficiency

Multi_Cores_main.m : The main function to test some parameters with multi core to improve the efficiency

Avicreate_point .m: Create the movie with the bacteria as point

Avicreate_segment.m: Create the movie with the bacteria as segment

Picture.m : Plot the motion of multi bacteria