Team:Chiba/Reference
From 2008.igem.org
UV response
Julianne Forman et al.: Photobiological and thermal effects of photoactivating UVA light doses on cell cultures.Photochem. Photobiol. Sci., 2007, 6, 649–658,649
Jaime L. Matta et al.: Environmental UV-A and UV-B Threshold Doses for Apoptosis and Necrosis in Human Fibroblasts.Photochemistry and Photobiology,2005,81 ,563–568
Bacterial Communication(Quorum Sensing)
general
Michiko E. Taga. Bonnie L.Bassler.:Chemical communication among bacteria.PNAS.November 25, 2003,100 .suppl.2
Melissa B. Miller and Bonnie L. Bassler.:QUORUM SENSING IN BACTERIA.annurev.micro.55.1.165.2001
specifics
Zhang et al .:Structure of a bacterial quorumsensing transcription factor complexed with pheromone and DNA.NATURE 417 ,2002,971-974
Margret I. Moré et al.: Enzymatic Synthesis of a Quorum-Sensing Autoinducer Through Use of Defined Substrates.PNAS.1996.272.1655-1658.
M. R. PARSEK et al.: Acyl homoserine-lactone quorum-sensing signal generation.PNAS.96.pp.4363.1999.Biochemistry
ANDERSEN et al.: gfp-Based N-Acyl Homoserine-Lactone Sensor Systems for Detection of Bacterial Communication.Vol. 67, No. 2.575–585.2001.APPL. ENVIRON. MICROBIOL.
L Ravn. et al.: Methods for detecting acylated homoserine lactones produced by Gram-negative bacteria and their application in studies of AHL-production kinetics.Journal of Microbiological Methods.44 (2001).239-251
Vibrio fischeri
A. L. SCHAEFER et al.: Generation of cell-to-cell signals in quorum sensing:Acyl homoserine lactone synthase activity of a purified Vibrio fischeri LuxI protein.PNAS.93, pp. 9507, September 1996,Biochemistry
C. H. Collins.et al.: Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones.Mol.Microbiol.2005.55 (3).712–723
Pseudomonas aeruginosa
Raychaudhuri.A et al .:Chemical Mechanism and Substrate Specificity of RhlI, an Acylhomoserine Lactone Synthase from Pseudomonas aeruginosa.Biochemistry,44(8),2974 -2981,2005
J P Pearson.et al.: Structure of the autoinducer required for expression of Pseudomonas aeruginosa virulence genes.PNAS,4,1994,91 ,No. 1 ,197-201
M K Winson et al.: Multiple N-acyl-L-homoserine lactone signal molecules regulate production of virulence determinants and secondary metabolites in Pseudomonas aeruginosa.PNAS,(1995),92 No.20,9427-9431
others
Chhabra, S. R. et al.: AUTOREGULATION OF CARBAPENEM BIOSYNTHESIS IN Erwinia carotovora BY ANALOGUES OF N-(3-OXOHEXANOYL)-L-HOMOSERINE LACTONE,(1993) J. Antibiot. 46, 441-454.
Cross-Talk
L. Steindler.V.Venturi.:Detection of quorum sensing N-acyl homoserine lactone signal molecules by bacterial biosensors.FEMS Microbiol Lett 266 (2007) 1-9L .
M.K Winson et al.: Construction and analysis of luxCDABE-based plasmid sensors for investigating N-acyl homoserine lactone-mediated quorum sensing.FEMS Microbiology Letters 163 (1998) 185-192
K.M.GRAY et al .Interchangeability and Specificity of Components from the Quorum-Sensing Regulatory Systems of Vibrio fischeri and Pseudomonas aeruginosa.J.BACTERIOL.176 ,1994,3076-3080
FK Balagadde et al .:A synthetic Escherichia coli predator–prey ecosystem.Molecular Systems Biology 4:187 ,2008
K. Brenner et al .:Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium.PNAS.2007.104 .no.44.17300–17304
C. H. Collins. et al .:Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR.Nature Biotechnology 24 , 708 - 712 (2006)
B. Koch. et al .:The LuxR receptor: the sites of interaction with quorum-sensing signals and inhibitors.Microbiology 151 (2005),3589-3602
Positive Feedback Loops(PFLs))
D. J. Sayut et al.: Construction and Engineering of Positive Feedback Loops.ACS Chemical Biology.1 .No.11.(2006)
D. J. Sayut et al.: Noise and kinetics of LuxR positive feedback loops.Biochem. Biophys. Res. Commun.363 (3),2007,667-673.
AiiA
Wang et al.:Specificity and Enzyme Kinetics of the Quorum-quenching N-Acyl Homoserine Lactone Lactonase (AHL-lactonase).J. Biol. Chem.279(14),13645-13651,2004.
promoter
Cox RS III, Surette MG,Elowitz MB.:Programming gene expression with combinatorial promoters Mol Syst Biol. 2007 Nov 13;3:145.
Output
Andersen.et al.: New Unstable Variants of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria.1998,2240-2246,64 ,No.6
T Nagai. et al.: A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.Nature Biotechnology,20 ,87 - 90,(2002)
Shaner et al.: Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat. Biotechnol. 22, 1567-1572 (2004)