Team:Groningen/references.html

 @import url("http://igemgroningen.nerbonne.org/igem2008/igemsite.css");    Home   Introduction  Design  Interval Switch</li> Genetic Circuit</a></li> Physical System</a></li> </ul> </li> Modeling </a> <ul Class="L2">  Single-cell </a></li>  Spatial model </a></li> Model Files</a></li> </ul> </li> Results</a> <ul class="L2">  Results </a></li>  Conclusion </a></li> iGEM Criteria</a></li> </ul> </li> About...</a> <ul class="L2">  The Team </a></li>  Groningen University </a></li>  References </a></li>  Acknowledgements </a></li> </ul> </li> </ul> References References quoted: J. von Neumann, and A.W. Burks. Theory of Self-Reproducing Automata. Univ. of Illinois Press, Urbana IL, 1966.</li> S. Wolfram. Universality and complexity in cellular automata. Physica D 10:1-35, 1984.</li>

S. Sen, C. Shaw, D.R. Chowdhuri, N. Ganguly, and P.P. Chaudhuri. Cellular Automata Based Cryptosystem (CAC), ICICS ‘02. Proceedings of the 4th International Conference on Information and Communications Security, 303--314. Springer-Verlag, London, UK 2002.</li> <li>G.B. Ermentrout, and L. Edelstein-Keshet. Cellular Automata Approaches to Biological Modeling. Journal of Theoretical Biology,160(1):97-133, January 1993.</li> <li><a href="http://www.partsregistry.org/">Partsregistry.org (October 2008)</a></li> <li>Martin Gardner. Mathematical Games: The fantastic combinations of John Conway’s new solitaire game “Life”. Scientific American 223:120-123, October 1970.</li> <li>B.L. Bassler. Small Talk: cell-to-cell communiction in bacteria. Cell, 109, 2002.</li> <li>C.H. Collins, F.H. Arnold, and J.R. Leadbetter. Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones. Molecular Microbiology, 55, 2005.</li> <li>S. Basu, R. Mehreja, S. Thiberge, M. T. Chen, and R. Weiss. Spatiotemporal control of gene expression with pulse-generating networks. PNAS USA, 101(17):6355–6360, April 2004.</li> <li>Simbiology. Model, design, and simulate biochemical pathways. The Mathworks Inc. version 2.3 (R2008a).</li> <li>Matlab. The Language of Technical Computing, The Mathworks Inc., version 7.6.0.324 (R2008a).</li> <li>M.B. Elowitz, and S. Leibler. A synthetic oscillatory network of transcriptional regulators. Nature 403(6767):335-338, January 2000.</li> <li><a href="http://openwetware.org/wiki/Griffitts:Common_media">Openwetware.org: Common Media</a></li> <li><a href="http://openwetware.org/wiki/TOP10_chemically_competent_cells">Openwetware.org: Chemically Competent TOP10 Cells</a></li> <li><a href="http://partsregistry.org/Assembly:Standard_assembly">Partsregistry.org Help: Standard Assembly</a></li> <li><a href="http://partsregistry.org/Help:How_to_check_a_part">Partsregistry.org Help: How to Check a Part</a></li> <li><a href="http://openwetware.org/wiki/IGEM:MIT/2005/Sequences_of_primers_specified">IGEM:MIT/2005/Sequences of primers specified</a></li> <li><a href="http://openwetware.org/wiki/Beta-Galactosidase_Assay_(A_better_Miller)">Beta-Galactosidase Assay (A Better Miller) on OpenWetware.org</a></li> <li>D. Endy. Foundations for engineering biology. Nature, 438:449–453, 2005.</li> <li>S. Hooshangi, S. Thiberge, and R. Weiss. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. PNAS USA, 102(10):3581–3586, 2005.</li> <li>M.A. Marchisio, and J. Stelling. Computational design of synthetic gene circuits with composable parts. Bioinformatics, 24(17):1903–1910, 2008.</li> <li><a href="http://2008.igem.org/Team:Groningen">Groningen iGEM2008 Team Wiki (October 1, 2008)</a></li> <li>U. Alon. An Introduction to Systems Biology: Design Principles of Biological Circuits. Chapman & Hall/ Crc Mathematical and Computational Biology Series, Chapman & Hall/CRC, July 2006.</li> <li>S. Basu, Y. Gerchman, C.H. Collins, F.H. Arnold, and R. Weiss. A synthetic multicellular system for programmed pattern formation. Nature, 434(7037):1130–1134.</li> <li>D. Braun, S. Basu, and R. Weiss. Parameter estimation for two synthetic gene networks: a case study. Acoustics, Speech, and Signal Processing, Proceedings (ICASSP ’05), 5. IEEE International Conference, March 2005.</li> <li>J.B. Andersen, C. Sternberg, L.K. Poulsen, S.P. Bjorn, M. Givskov, and S. Molin, S. New Unstable Variants of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria. Applied and Environmental Microbiology, 64(6):2240-2246, 1998.</li> <li><a href="http://molgen.biol.rug.nl/molgen/files/VMT.pdf">University of Groningen Biological Safety Manual</a></li>

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