Edinburgh/Notebook/Minipreps

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Minipreps of Confirmed Clones

 * M2: pSB1A2+dxs
 * M15: pSB1A2+appY
 * (?) M36: pSB1A2+crtB (sequencing results not recorded, but follow-up did occur)
 * (?) M42: pSB1A2+crtI (sequencing results not recorded, but follow-up did occur)
 * M43: BABEL2(?)+glgC double mutant.
 * M50: pSB1A2+rbs+crtI
 * M63: BABEL2+rbs+crtE
 * M67: pSB1A2+rbs+crtB
 * M72: pSB1A2+rbs+dxs
 * M79: BABEL2+crtE
 * M82: pSB1A2+rbs+appY
 * M109: pSB1A2+crtBI
 * (?) M121: pSB1A2+crtY (sequencing results not posted; no follow-up recorded)
 * (?) M124 pSB1A2+rbs+crtY (sequencing results not posted; no follow-up recorded)
 * M116: pSB1A2+glgC double mutant
 * M130: pSB1A2+PcstA
 * M137: pSB1A2+dxs+LIMS1
 * M150: pSB1A2+cex
 * M152: pSB1A2+dxs+crtE
 * M154: not sequenced, but similar to M152.
 * M155: not sequenced, but also similar to M152; ligated to M110 (crtBI) in L62.
 * M162: pSB1A2+dxs+LIMS1+appY
 * M212: pSB1A2+glgC triple mutant (ie. glgC16)
 * M222: pSB1A2+Plac+dxs+LIMS1+appY
 * M233: pSB1A2+cex mutant (PstI site removed)
 * M234, 235: not sequenced, but similar to M233.
 * M237, 238: pSB1A2+cenA
 * M243: pSB1A2+rbs+glgC
 * M245: pSB1A2+rbs+glgC16
 * M254: pSB1A2+Plac+rbs+glgC
 * M256: pSB1A2+Plac+rbs+glgC16
 * M258: pSB1A2+PcstA+lacZ'  (BBa_J15202)
 * M259: pSB1A2+PcstA+xylE (BBa_J33204)
 * M281: pSB1A2+bglX coding sequence
 * M303: pSB1A2+rbs+cex
 * M305: pSB1A2+rbs+cenA
 * M307: pSB1A2+rbs+bglX

Complete List of Minipreps
M1 to M6: pSB1A2+dxs transformants (plate 11). M2, M3, M4 and M6 all looked correct on gel 2. (30.06.08) - M2 was sequenced to confirm identity and was maxiprepped as X2.

M7: BABEL1+glgC transformant (plate 12). Did not look right on gel. (30.06.08)

M8 to M12: BABEL2+glgC transformants (plate 13). M10 and M11 both looked good on a gel, but sequencing showed that both had the insert in the reverse orientation. (30.06.08)

M13 to M18: pSB1A2+appY transformants. Gel 10 showed that M15 to M18, and possibly M14, all seemed to have inserts the right size. (09.07.08)

M19 to M24: BABEL2+glgC clones after mutation of EcoRI site 2. EcoRI digests on *Gel 11* suggest that *M19, M21 and M22* may have lost the EcoRI site. (10.07.08)

M25 to M30: possible rbs+dxs transformants from plate 34. (13.07.08)

M31 to M36: pSB1A2+crtB clones from plate 35. (14.07.08)

M37 to M42: pSB1A2+crtI clones from plate 36. (14.07.08)

M43 to M47: possible BABEL2+glgC double mutants (both EcoRI sites gone). (19.07.08)

M48: a possible pSB1A2+rbs+dxs clone. (19.07.08)

M49 to M54: pSB1A2-rbs+crtI. (29.07.08: CF)

M55 to M60: Putative pSB1A2+PzntA (L23). (29.07.08: Yan, Nimisha) - M50 sequenced (31.07.08: CF)

M61 to M66: Putative pSB1A2+rbs+crtE (L22). (29.07.08: Yan, Nimisha) - M63 sequenced (31.07.08: CF)

M67: rbs+crtB (L21) (29.07.08: Yan, Nimisha) - Sequenced (31.07.08: CF)

M68 to M71: pSB1A2+glgC-mut1,2 from plate 73 (31.07.08: AM, Yan)

M72 to M75: pSB1A2+rbs+dxs from plate 74 (31.07.08: AM, Yan)

M76 to M79: BABEL2+crtE from plate 74 (31.07.08: AM, Yan) M80 to M83: pSB1A2+rbs+appY from plate 83. (04.08.08: Yan, OG)

M84 to M85: pSB1A2+rbs+crtB from plate 84. (04.08.08: Yan, OG)

M86 to M90: pSB1A2+cenA from plate 85. (04.08.08: Yan, OG)

M91 to M96: pSB1A2+cex from plate 86. (04.08.08: Yan, OG)

M97 to M104: pSB1A2+cenA from plate 85. (05.08.08: Yan)

M105 to M108: pSB1A2+cex from plate 85. (05.08.08: Yan)

M109 to M112: pSB1A2+crtB+crtI and plate 102 (11.08.08: OG)

M113 to M116: pSB1A2+glgC-mut1,2 and plate 103 (11.08.08: OG)

M117 to M120: pSB1A2+glgC-mut1,2,3 and plate 94 (11.08.08: OG)

M121 to M123: pSB1A2-crtY (12.08.08: OG)

M124 to M126: pSBA12-rbs+crtY (12.08.08: OG)

M127 to M130: pSB1A2-PcstA from plate 115 (13.08.08: OG)

M131 to M134: Minipreps of dxs+crtE (1,2,3,4) Note: M132 might be M136 (13.08.08: OG)

M135 to M138: Minipreps of dxs+LIMS1 (1,2,3,4) Note: M136 might be M132 (13.08.08: OG)

M139 to M143: Minipreps of pSB1A2 +crtE (1 to 4) Note: M142 and M143 both made from culture 4.(15.08.08: YAN/OG)

M144 to M147: pSB1A2+cenA from plate 129 - Methanol used in preparation rather than ethanol! (18.08.08: OG)

M148 to M151: pSB1A2+cex from plate 129. (18.08.08: OG)

M152 to M155: pSB1A2+dxs+crtE from plate 130 (18.08.08: OG)

M156 to M159: pSB1A2+cenA (20.08.08: OG) M160 to M163: Plate 155 streaks 1-4 (L48, pSB1A2+dxs+lims+appY) (25.08.08: AH) M164: Plate 155 streak 5 (L49, pSB1A2+crtB+crtI+appY) (25.08.08: AH) M165 to M168: Plate 158 streaks 1-4 (L50, SOB+glgC-mut1,2) (25.08.08: AH) M169 to M172: Plate 159 streaks 1-4 (L51, SOB+glgC-mut1,2,3) (25.08.08: AH, Yan) M173: Plate 160 streak 1 (L55 (SOB+rbs+glgC-mut1,2,3) (25.08.08: Yan) M174 to M175: Plate 160 streaks 2 and 3 (L52, SOB+glgC-mut1,2,3) (25.08.08: Yan) M176 to M178: Plate 161 streaks 1-3 (L53, SOB+rbs+glgC-mut1,2) (25.08.08: Yan) M179 to M181: Plate 163 streaks 1-3 (L56, pSB1A2+pcstA+lacZ' ) (25.08.08: Yan) M182 to M187: pSB1A2+cenA (01.09.08: YAN) M188 to M193: crtBI+appY (01.09.08: YAN) M194 to M197: appY+dxs+LIMS1 (02.09.08:YAN) M198 to M200: L58 = self-ligation of P91 (SOB2-SU1). M199 and M200 were missed out by accident. (09.09.08: Yan) M201 to M203: L59 = self-ligation of P92 (SOB2-rbs-SU1). (09.09.08: Yan) M204 to M206: L60 = self-ligation of P93 (SOB2-ISO2). (09.09.08: Yan) M207 to M209: L61 = self-ligation of P94 (SOB2-rbs-ISO2). (09.09.08: Yan) M210 to M212: pSB1A2-glgc triple mutants. (15.09.08: AM) M213: dxs+crtEBI. (15.09.08: AM) M214: pSB1A2-cenA. (15.09.08: AM) M215 to M216: pSB1A2-bglX. (15.09.08: AM) M217 to M221: dxs+crtEBI. (15.09.08: AM) M222 to M225: Plac+dxs+LIMS1+appY patches 1, 2, 6 and 7 (CF, 23-9-8). All look OK on gel. M222 confirmed by sequencing. M226 to M229: SOB-SU1. (CF, 27-9-8) Only M229 looks plausible on gel, but sequencing shows problem at end. M230 to M232: SOB-ISO2. (CF, 27-9-8) All looked OK; sequencing showed M230 and 232 OK, 231 problem with suffix. M233 to M235: pSB1A2-cex mutant (CF) Sequence showed M233 OK. M236 to M238: pSB1A2-cenA (CF, 27-9-8). M236 clearly wrong on gel, others plausible. Sequence showed M237 OK. M239 to M241: pSB1A2-bglX (CF, 27-9-8) Only 240 looked plausible on gel, sequence showed wrong. M242 to M243: pSB1A2-rbs-glgC (CF, 28-9-8) M244 to M245: pSB1A2-rbs-glgC16 (CF, 28-9-8) M246 to M247: pSB1A2-bglX (CF, 28-9-8). M247 looks plausible but sequencing shows wrong. M248 to M253: pSB1A2-crtBI-dxs-crtE (CF, 30-9-8). All look wrong. M254 to M255: pSB1A2-Plac-glgC (CF, 2-10-8). Look OK. M254 confirmed by sequencing. M256 to M257: pSB1A2-Plac-glgC16 (CF, 2-10-8). Look OK. M256 confirmed by sequencing. M258: pSB1A2-PcstA-lacZ'  (CF, 2-10-8). Looks OK, confirmed by sequencing. M259: pSB1A2-PcstA-xylE (CF, 2-10-8). Looks OK, confirmed by sequencing. M260 to M265: SOB-SU1 (CF, 3-10-8). M265 looks OK on gel, confirmed by sequencing. M266 to M269: SOB-ISO2 (CF, 4-10-8). M269 looks plausible on gel. M270 to M272: pSB1A2+rbs+cex (CF, 8-10-8). All look wrong. M273 to M275: pSB1A2+rbs+cenA (CF, 8-10-8). M273, 274 looked OK but turned out to be wrong gene. M276 to M278: pSB1A2+rbs+cex (CF, 11-10-8). M276 looked OK but turned out to be wrong gene. M279 to M282: pSB1A2+bglX (CF, 14-10-8). All looked Ok on gel, but sequencing showed that all but M281 had frameshift mutations in a run of A near the start resulting in premature termination. M281 seems OK though. M283 to M286: from mutagenesis of SU1 (CF, 14-10-8 and 15-10-8). M286 looks wrong, others still seem to have the EcoRI site. M287 to M290: from mutagenesis of ISO2 (CF, 15-10-8). All seem to still have EcoRI site. M291 to M293: pSB1A2+Plac+crtBI (CF, 16-10-8). All look OK. M294 to M296: pSB1A2+Plac+dxs.crtE (CF, 16-10-8). All look OK. M297 to M300: from mutagenesis of SU1 (CF, 19-10-8). All seem to still have EcoRI site. M301: from mutagenesis of ISO2 (CF, 19-10-8). Seems to still have EcoRI site. M302: supposed to be Plac+dxs.crtEBI but seems to be just Plac+dxs.crtE (CF, 19-10-8). M303 to M304: pSB1A2+rbs+cex (CF, 26-10-8). Both look OK. M305 to M306: pSB1A2+rbs+cenA (CF, 26-10-8). Both look OK. M307 to M308: pSB1A2+rbs+bglX (CF, 26-10-8). Both look OK.