Team:TUDelft/Papers

=References=

Thermometer
 J. Lee & N.A. Kotov. Thermometer design at the nanoscale. Nano Today, 2(1):48-51, 2007. doi:10.1016/S1748-0132(07)70019-1 

RNA switches
Marzi S, Fechter P, Chevalier C, Romby P, Geissmann T. RNA switches regulate initiation of translation in bacteria. Biological Chemistry, 389(5):585-598, 2008. PMID:18953726

Narberhaus F. mRNA-mediated detection of environmental conditions. Archives of Microbiology, 178(6):404-410, 2002. PMID:16680139

Isaacs FJ, Dwyer DJ, Collins JJ. RNA synthetic biology. Nature Biology, 24(5):545-554, 2006. PMID:16680139



RNA thermometers
F. Narberhaus, T. Waldminghaus & S. Chowdhury. RNA thermometers. FEMS Microbiol Rev, 30(1):3-16, 2006. PMID:16438677 Saheli Chowdhury, Christophe Maris, Frédéric H-T Allain, and Franz Narberhaus. Molecular basis for temperature sensing by an RNA thermometer. The EMBO Journal, 25:2487–2497, 2006. PMID:16710302  J. Johansson, P. Mandin, A. Renzoni, C. Chiaruttini, M. Springer, and P. Cossart. An RNA thermosensor controls expression of virulance genes in Listeria monocytogenes. Cell, 110(5):551-561, 2002. PMID:12230973 Torsten Waldminghaus, Nadja Heidrich, Sabine Brantl, and Franz Narberhaus. FourU: a novel type of RNA thermometer in Salmonella. Molecular Microbiology, 65(2):413-424, 2007. PMID:17630972</li> M. Wieland and J.S. Hartig. RNA Quadruplex-Based Modulation of Gene Expression. Chemistry & Biology, 14(7):757–763, 2007. PMID:17656312</li> Saheli Chowdhury, Curdin Ragaz, Emma Kreuger, and Franz Narberhaus. Temperature-controlled Structural Alterations of an RNA Thermometer. The Journal of Biological Chemistry, 278(48):47915-47921, 2003. PMID:12963744</li> Nocker A, Hausherr T, Balsiger S, Krstulovic NP, Hennecke H, Narberhaus F. A mRNA-based thermosensor controls expression of rhizobial heat shock genes. 29(23):4800-4807, 2001 PMID:11726689</li> </ul>

Color
A general text on using micro-organisms for flavor production </li> The references page on the edinburgh 2007 wiki, several references on color and flavor are present </li> </ul>

Two papers on Geosmin biosynthesis (an earthy odorant): Biosynthesis of the earthy odorant geosmin by a bifunctional Streptomyces coelicolor enzyme, Jiang et al.</li> A Novel Type of Geosmin Biosynthesis in Myxobacteria, Dickschat et al. </li> </ul>

Papers on plant volatile production: Biosynthesis of Plant Volatiles: Nature’s Diversity and Ingenuity, Pichersky et al. </li> Biosynthesis of plant-derived flavor compounds, Schwab et al. </li> Rose Scent </li> Stable-light producing E. coli </li> Identification of genes for bacterial bioluminescence </li> Group in Leiden working with the Soil Bacterium Streptomyces </li> </ul>