Content of the package...



     Bacterium_running



 Bacterium_running.m : Simulate the motion of a single bacterium, to test the correctness of the model

 L.m : Calculate the concentration field

 Motor.m : Calculate the new state of the motor

 ODE.m : The transition function to take the L(x) to pathway(y, L)

 Pathway.m : The pathway differential equation

 Steady_state.m : Calculate the concentration of molecules in chemotaxis pathway at steady state

 Plot.m : Plot the trace of the bacterium and CheYp

  </o:p>

<p class=MsoNormal> Bacterium_parameter_test.m : Another version of bacterium_running.m for parameter test

<p class=MsoNormal> Parameter_test_single_core.m : Test some parameters for the CPU has a single core

<p class=MsoNormal> Parameter_test_multi_core.m : Test some parameters with multi core to improve the efficiency

<p class=MsoNormal> Multi_Cores_main.m : The main function to test some parameters with multi core to improve the efficiency

<p class=MsoNormal> <o:p> </o:p>

<p class=MsoNormal> Avicreate_point .m: Create the movie with the bacteria as point

<p class=MsoNormal> Avicreate_segment.m: Create the movie with the bacteria as segment

<p class=MsoNormal> Picture.m : Plot the motion of multi bacteria