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G

getBottom() - Method in enum BasePair
Returns the nucleotide at the bottom of the base pair.
getBottom() - Method in class Tree
Returns the bottom RNA sequence.
getEnergy() - Method in enum Loop
Returns the free energy of the loop.
getEnergyProfile() - Method in class Tree
Returns the energy profile.
getLeft() - Method in enum Loop
Returns the left base pair.
getLoops(String, int, int) - Static method in enum Loop
This method returns all the Loops that 'fit' the given template and have an energy value in between the given upper and lower bound.
getMaxDist() - Method in class Tree
Returns the maximal distance to the energy profile.
getResults(ArrayList<String>, String) - Method in class Node
This method returns the sequences of the hairpins that are the result after building this tree.
getResults(String) - Method in class Tree
Returns the resulting RNA hairpins that fit the template and have a stability profile that fits the given energy profile.
getRight() - Method in enum Loop
Returns the right base pair.
getSize() - Method in enum Loop
Returns the size of the loop.
getTop() - Method in enum BasePair
Returns the nucleotide at the top of the base pair.
getTop() - Method in class Tree
Returns the top RNA sequence.

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