Team:Warsaw/Calendar-Main/6 October 2008

From 2008.igem.org

(Difference between revisions)
 
(22 intermediate revisions not shown)
Line 8: Line 8:
-
<h3>Preparation of <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _alpha</h3>
+
<h3>Preparation of <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a></h3>
<h4>Michał K.</h4>
<h4>Michał K.</h4>
<ol><li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#LinLSXNE">LinLSXNE</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AlphaPSpe">AlphaPSpe</a>
<ol><li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#LinLSXNE">LinLSXNE</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AlphaPSpe">AlphaPSpe</a>
-
  primers on colonies from plates with transformations <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a>+ <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> (annealing temperature - 55&deg;C,60 s of elongation step). No visible bands for proper product.</li>
+
  primers on colonies from plates with transformations <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a>+ <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> (annealing temperature - 55&deg;C,60 s of elongation step). No visible bands for proper product (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig1">Fig. 1</a>).</li>
-
<li>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _alpha to liquid LB + kanamycin. </li></ol>
+
<li>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + <a href=http://partsregistry.org/Part:BBa_K103009>linker_alpha (BBa_K103009)</a> to liquid LB + kanamycin. </li></ol>
 +
<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/6/66/Kolonijny_alfa.jpg"></a>
 +
<var><b>Fig. 1.</b>Colony PCR with LinLSXNE and AlphaPSpe. Lack of expected 400 bp product.</var>
-
<h3>Preparation of <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _omega</h3>
+
 
 +
 
 +
<h3>Preparation of <a href=http://partsregistry.org/Part:BBa_K103013>linker_omega (BBa_K103013)</a></h3>
<h4>Michał K.</h4>
<h4>Michał K.</h4>
-
<p>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _omega to liquid LB + kanamycin.</p>
+
<p>Inoculation of some colonies which grown on plate - <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + <a href=http://partsregistry.org/Part:BBa_K103013>linker_omega (BBa_K103013)</a> to liquid LB + kanamycin.</p>
Line 25: Line 29:
-
<h3>Preparation of BioBricks</h3>
+
<h3>Preparation of <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a></h3>
<h4>Michał K.</h4>
<h4>Michał K.</h4>
<ol>
<ol>
<li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaL_N">OmpaL_N</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaP_link">OmpaP_link</a>
<li> Colony <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#pcr">PCR</a> with <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaL_N">OmpaL_N</a> and <a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#OmpaP_link">OmpaP_link</a>
-
  primers on colonies from plates with transformations <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a>+ OmpA_omega (annealing temperature - 55&deg;C,90 s of elongation step). No visible bands for proper product.</li>
+
  primers on colonies from plates with transformations <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> (annealing temperature - 55&deg;C,90 s of elongation step). No visible bands for proper product (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig2">Fig. 2</a>).</li>
 +
<li>Inoculation of some colonies which grown on plate transformation: <a href=http://partsregistry.org/Part:BBa_I739204>pACYC177</a> + <a href=http://partsregistry.org/Part:BBa_K103016>OmpA-linker-omega-linker (BBa_K103016)</a> to liquid LB + kanamycin. </li></ol>
 +
<a name="fig2"><img src="https://static.igem.org/mediawiki/2008/c/ce/Kolonijny_ompa_01_10_2008.jpg"></a>
 +
<var><b>Fig. 2.</b>Colony PCR with OmpaL_N and OmpaP_link. Lack of expected 350 bp product. </var>
-
<li>Inoculation of some colonies which grown on plates with three separate transformations: <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _alpha, <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + _omega and pACYC177 + OmpA_omega_ to liquid LB + kanamycin. </li>
+
<h3>Preparation of vector for pT7 constructs</h3>
-
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#digest">Digest</a> of <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a> plasmid with XbaI and PstI (Tango buffer). <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmid.</li>
+
<h4>Michał K.</h4>
-
<li> Gel electrophoresis and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band - 2200 bp.</li>
+
<p> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">selfligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-omega>pET15b+OmpA_omega</a> (with removed XbaI).</p>
-
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of isolated DNA fragments: <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> + pLac_OmpA_omega (without EcoRI site) and self ligation of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-omega>pET15b+OmpA_omega</a> without XbaI.</li>
 
 +
<h3>Preparation of <a href=http://partsregistry.org/Part:BBa_K103018>OmpA_linker_omega_linker under Plac (BBa_K103018)</a></h3>
 +
<h4>Michał K.</h4>
 +
<p> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of isolated DNA fragments <a href=http://partsregistry.org/Part:pSB2K3>pSB2K3</a> (from <a href=https://2008.igem.org/Team:Warsaw/Calendar-Main/1_October_2008>1 October</a>) + <a href=http://partsregistry.org/Part:BBa_K103018>OmpA_linker_omega_linker under Plac (BBa_K103018)</a> (without EcoRI site).</p>
 +
 +
 +
 +
 +
<h3>Preparation of <a href=http://partsregistry.org/Part:BBa_K103001>AID(BBa_K103001)</a></h3>
 +
<h4>Michał K.</h4>
 +
<ol>
 +
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#digest">Digest</a> of <a href=http://partsregistry.org/wiki/index.php?title=Part:pSB1A3>pSB1A3</a> plasmid with XbaI and PstI (Tango buffer). <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmid.</li>
 +
<li> Gel electrophoresis and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band - 2200 bp. <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/6_October_2008#fig3">Fig. 3</a>.</li>
</ol>
</ol>
 +
 +
 +
<a name="fig3"><img src="https://static.igem.org/mediawiki/2008/4/49/Go_05_10_2008.jpg"></a>
 +
<var><b>Fig. 3.</b>XbaI/PstI digest of pSB1A3.<br>
 +
1. Marker<br>
 +
2. XbaI/PstI digest pSB1A3<br> </var>
 +
</html>
</html>

Latest revision as of 21:19, 28 October 2008

Gallery Bricks Notebook Team Project Home


Previous day
return to main notebook page
Previous entry
next notebook entry

 




Preparation of linker_alpha (BBa_K103009)

Michał K.

  1. Colony PCR with LinLSXNE and AlphaPSpe primers on colonies from plates with transformations pSB1A3+ linker_alpha (BBa_K103009) (annealing temperature - 55°C,60 s of elongation step). No visible bands for proper product (Fig. 1).
  2. Inoculation of some colonies which grown on plate - pSB2K3 + linker_alpha (BBa_K103009) to liquid LB + kanamycin.
Fig. 1.Colony PCR with LinLSXNE and AlphaPSpe. Lack of expected 400 bp product.

Preparation of linker_omega (BBa_K103013)

Michał K.

Inoculation of some colonies which grown on plate - pSB2K3 + linker_omega (BBa_K103013) to liquid LB + kanamycin.

Preparation of OmpA-linker-omega-linker (BBa_K103016)

Michał K.

  1. Colony PCR with OmpaL_N and OmpaP_link primers on colonies from plates with transformations pACYC177 + OmpA-linker-omega-linker (BBa_K103016) (annealing temperature - 55°C,90 s of elongation step). No visible bands for proper product (Fig. 2).
  2. Inoculation of some colonies which grown on plate transformation: pACYC177 + OmpA-linker-omega-linker (BBa_K103016) to liquid LB + kanamycin.
Fig. 2.Colony PCR with OmpaL_N and OmpaP_link. Lack of expected 350 bp product.

Preparation of vector for pT7 constructs

Michał K.

Overnight selfligation of pET15b+OmpA_omega (with removed XbaI).

Preparation of OmpA_linker_omega_linker under Plac (BBa_K103018)

Michał K.

Overnight ligation of isolated DNA fragments pSB2K3 (from 1 October) + OmpA_linker_omega_linker under Plac (BBa_K103018) (without EcoRI site).

Preparation of AID(BBa_K103001)

Michał K.

  1. Digest of pSB1A3 plasmid with XbaI and PstI (Tango buffer). Dephosphorylation (CIAP) of plasmid.
  2. Gel electrophoresis and gel-out of proper band - 2200 bp. Fig. 3.
Fig. 3.XbaI/PstI digest of pSB1A3.
1. Marker
2. XbaI/PstI digest pSB1A3