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Team:Groningen/modeling files.html
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Modeling Files
Single-Cell Model Files
These files where used to model the single cell interval switch:
| ModelBrickReadme.txt | Readme for ModelBrick Assembler |
| mba.m | MATLAB script file for automatic assembly of modelbricks. |
| modelbricks.zip | contains all parts used in .xml format. |
| partslibrary.mat | MATLAB workspace file containing all parts used in SimBiology model format. |
| Intervalswitch.sbproj | This SimBiology project file contains the complete, assembled, interval switch. The 'diagram overview' option shows the structure of the model. The 'model tasks - conserved cycles' option shows the flow of RNA polymerases and Ribosomes through the system as well as the dynamics of promoter states. |
Please refer to the readme file for further information on usage.
The detailed "modelbrick" descriptions can be found in this appendix.
Single-Cell Model Files
The Matlab ".M" file implementing the spatial model can be found here. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!
