Team:Bologna/Modeling

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(Mathematical Model)
(Mathematical Model)
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In the model we distinguish between LacI protein binded to repressor IPTG ([[Image:f01.jpg]]) and protein free ([[Image:f02.jpg]]).
In the model we distinguish between LacI protein binded to repressor IPTG ([[Image:f01.jpg]]) and protein free ([[Image:f02.jpg]]).
-
Since [[Image:f03.jpg]] and considering the law of mass action [[Image:f2a.jpg]] we can write [[Image:f03.jpg]].   
+
Since [[Image:f03.jpg]] and considering the law of mass action [[Image:f2a.jpg]] we can write [[Image:f3.jpg]].   
Knowing that  [[Image:f1aa.jpg|center]]  and  the law of mass action  [[Image:f2a.jpg|center]] is possible write      [[Image:f3.jpg|center]]  where we can replace [[Image:f4.jpg|center]] represents the entry of IPTG inside the cell.
Knowing that  [[Image:f1aa.jpg|center]]  and  the law of mass action  [[Image:f2a.jpg|center]] is possible write      [[Image:f3.jpg|center]]  where we can replace [[Image:f4.jpg|center]] represents the entry of IPTG inside the cell.
The same thing can be done even for LexA  obtaining  [[Image:f5.jpg|center]]  where [[Image:f6.jpg|center]] represents the UV radiation.
The same thing can be done even for LexA  obtaining  [[Image:f5.jpg|center]]  where [[Image:f6.jpg|center]] represents the UV radiation.

Revision as of 13:05, 16 October 2008

Logo1a.gifTestata dx.jpg
HOME THE PROJECT THE TEAM PARTS SUBMITTED TO THE REGISTRY MODELING NOTEBOOK BIOSAFETY


Mathematical Model


Fig. 1: Genetic flip-flop


Let us pose: F.jpg


The genetic circuit in Figure 1 can be modeled with the following equations:

Equa1.jpg

Where:

Tab.jpg

In the model we distinguish between LacI protein binded to repressor IPTG (F01.jpg) and protein free (F02.jpg).

Since F03.jpg and considering the law of mass action F2a.jpg we can write F3.jpg.

Knowing that and the law of mass action
F2a.jpg
is possible write
F3.jpg
where we can replace
F4.jpg
represents the entry of IPTG inside the cell. The same thing can be done even for LexA obtaining
F5.jpg
where
F6.jpg
represents the UV radiation.

Placing:

F7.jpg

The dimensionless equations are:

F8.jpg

Hypothesizing: to be under conditions of equilibrium;

all the entries are void (); the affinity of the repressor for the operator site is high, for as we have been defined it will surely be smaller of one so ;

the cooperativity is the same both for the LacI and for TetR and it is worth 2; the equations become:

Bibliography

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