Team:Edinburgh/Modeling

From 2008.igem.org

(Difference between revisions)
Line 1: Line 1:
 +
<html>
 +
<head>
 +
<title>Edinburgh iGem 2008</title>
 +
<script type="text/javascript">
 +
//Drop Down Tabs Menu- Author: Dynamic Drive (http://www.dynamicdrive.com)
 +
//Created: May 16th, 07'
 +
 +
var tabdropdown={
 +
disappeardelay: 200, //set delay in miliseconds before menu disappears onmouseout
 +
disablemenuclick: false, //when user clicks on a menu item with a drop down menu, disable menu item's link?
 +
enableiframeshim: 1, //1 or 0, for true or false
 +
 +
//No need to edit beyond here////////////////////////
 +
dropmenuobj: null, ie: document.all, firefox: document.getElementById&&!document.all, previousmenuitem:null,
 +
currentpageurl: window.location.href.replace("http://"+window.location.hostname, "").replace(/^\//, ""), //get current page url (minus hostname, ie: http://www.dynamicdrive.com/)
 +
 +
getposOffset:function(what, offsettype){
 +
var totaloffset=(offsettype=="left")? what.offsetLeft : what.offsetTop;
 +
var parentEl=what.offsetParent;
 +
while (parentEl!=null){
 +
totaloffset=(offsettype=="left")? totaloffset+parentEl.offsetLeft : totaloffset+parentEl.offsetTop;
 +
parentEl=parentEl.offsetParent;
 +
}
 +
return totaloffset;
 +
},
 +
 +
showhide:function(obj, e, obj2){ //obj refers to drop down menu, obj2 refers to tab menu item mouse is currently over
 +
if (this.ie || this.firefox)
 +
this.dropmenuobj.style.left=this.dropmenuobj.style.top="-500px"
 +
if (e.type=="click" && obj.visibility==hidden || e.type=="mouseover"){
 +
if (obj2.parentNode.className.indexOf("default")==-1) //if tab isn't a default selected one
 +
obj2.parentNode.className="selected"
 +
obj.visibility="visible"
 +
}
 +
else if (e.type=="click")
 +
obj.visibility="hidden"
 +
},
 +
 +
iecompattest:function(){
 +
return (document.compatMode && document.compatMode!="BackCompat")? document.documentElement : document.body
 +
},
 +
 +
clearbrowseredge:function(obj, whichedge){
 +
var edgeoffset=0
 +
if (whichedge=="rightedge"){
 +
var windowedge=this.ie && !window.opera? this.standardbody.scrollLeft+this.standardbody.clientWidth-15 : window.pageXOffset+window.innerWidth-15
 +
this.dropmenuobj.contentmeasure=this.dropmenuobj.offsetWidth
 +
if (windowedge-this.dropmenuobj.x < this.dropmenuobj.contentmeasure)  //move menu to the left?
 +
edgeoffset=this.dropmenuobj.contentmeasure-obj.offsetWidth
 +
}
 +
else{
 +
var topedge=this.ie && !window.opera? this.standardbody.scrollTop : window.pageYOffset
 +
var windowedge=this.ie && !window.opera? this.standardbody.scrollTop+this.standardbody.clientHeight-15 : window.pageYOffset+window.innerHeight-18
 +
this.dropmenuobj.contentmeasure=this.dropmenuobj.offsetHeight
 +
if (windowedge-this.dropmenuobj.y < this.dropmenuobj.contentmeasure){ //move up?
 +
edgeoffset=this.dropmenuobj.contentmeasure+obj.offsetHeight
 +
if ((this.dropmenuobj.y-topedge)<this.dropmenuobj.contentmeasure) //up no good either?
 +
edgeoffset=this.dropmenuobj.y+obj.offsetHeight-topedge
 +
}
 +
this.dropmenuobj.firstlink.style.borderTopWidth=(edgeoffset==0)? 0 : "1px" //Add 1px top border to menu if dropping up
 +
}
 +
return edgeoffset
 +
},
 +
 +
dropit:function(obj, e, dropmenuID){
 +
if (this.dropmenuobj!=null){ //hide previous menu
 +
this.dropmenuobj.style.visibility="hidden" //hide menu
 +
if (this.previousmenuitem!=null && this.previousmenuitem!=obj){
 +
if (this.previousmenuitem.parentNode.className.indexOf("default")==-1) //If the tab isn't a default selected one
 +
this.previousmenuitem.parentNode.className=""
 +
}
 +
}
 +
this.clearhidemenu()
 +
if (this.ie||this.firefox){
 +
obj.onmouseout=function(){tabdropdown.delayhidemenu(obj)}
 +
obj.onclick=function(){return !tabdropdown.disablemenuclick} //disable main menu item link onclick?
 +
this.dropmenuobj=document.getElementById(dropmenuID)
 +
this.dropmenuobj.onmouseover=function(){tabdropdown.clearhidemenu()}
 +
this.dropmenuobj.onmouseout=function(e){tabdropdown.dynamichide(e, obj)}
 +
this.dropmenuobj.onclick=function(){tabdropdown.delayhidemenu(obj)}
 +
this.showhide(this.dropmenuobj.style, e, obj)
 +
this.dropmenuobj.x=this.getposOffset(obj, "left")
 +
this.dropmenuobj.y=this.getposOffset(obj, "top")
 +
this.dropmenuobj.style.left=this.dropmenuobj.x-this.clearbrowseredge(obj, "rightedge")+"px"
 +
this.dropmenuobj.style.top=this.dropmenuobj.y-this.clearbrowseredge(obj, "bottomedge")+obj.offsetHeight+1+"px"
 +
this.previousmenuitem=obj //remember main menu item mouse moved out from (and into current menu item)
 +
this.positionshim() //call iframe shim function
 +
}
 +
},
 +
 +
contains_firefox:function(a, b) {
 +
while (b.parentNode)
 +
if ((b = b.parentNode) == a)
 +
return true;
 +
return false;
 +
},
 +
 +
dynamichide:function(e, obj2){ //obj2 refers to tab menu item mouse is currently over
 +
var evtobj=window.event? window.event : e
 +
if (this.ie&&!this.dropmenuobj.contains(evtobj.toElement))
 +
this.delayhidemenu(obj2)
 +
else if (this.firefox&&e.currentTarget!= evtobj.relatedTarget&& !this.contains_firefox(evtobj.currentTarget, evtobj.relatedTarget))
 +
this.delayhidemenu(obj2)
 +
},
 +
 +
delayhidemenu:function(obj2){
 +
this.delayhide=setTimeout(function(){tabdropdown.dropmenuobj.style.visibility='hidden'; if (obj2.parentNode.className.indexOf('default')==-1) obj2.parentNode.className=''},this.disappeardelay) //hide menu
 +
},
 +
 +
clearhidemenu:function(){
 +
if (this.delayhide!="undefined")
 +
clearTimeout(this.delayhide)
 +
},
 +
 +
positionshim:function(){ //display iframe shim function
 +
if (this.enableiframeshim && typeof this.shimobject!="undefined"){
 +
if (this.dropmenuobj.style.visibility=="visible"){
 +
this.shimobject.style.width=this.dropmenuobj.offsetWidth+"px"
 +
this.shimobject.style.height=this.dropmenuobj.offsetHeight+"px"
 +
this.shimobject.style.left=this.dropmenuobj.style.left
 +
this.shimobject.style.top=this.dropmenuobj.style.top
 +
}
 +
this.shimobject.style.display=(this.dropmenuobj.style.visibility=="visible")? "block" : "none"
 +
}
 +
},
 +
 +
hideshim:function(){
 +
if (this.enableiframeshim && typeof this.shimobject!="undefined")
 +
this.shimobject.style.display='none'
 +
},
 +
 +
isSelected:function(menuurl){
 +
var menuurl=menuurl.replace("http://"+menuurl.hostname, "").replace(/^\//, "")
 +
return (tabdropdown.currentpageurl==menuurl)
 +
},
 +
 +
init:function(menuid, dselected){
 +
this.standardbody=(document.compatMode=="CSS1Compat")? document.documentElement : document.body //create reference to common "body" across doctypes
 +
var menuitems=document.getElementById(menuid).getElementsByTagName("a")
 +
for (var i=0; i<menuitems.length; i++){
 +
if (menuitems[i].getAttribute("rel")){
 +
var relvalue=menuitems[i].getAttribute("rel")
 +
document.getElementById(relvalue).firstlink=document.getElementById(relvalue).getElementsByTagName("a")[0]
 +
menuitems[i].onmouseover=function(e){
 +
var event=typeof e!="undefined"? e : window.event
 +
tabdropdown.dropit(this, event, this.getAttribute("rel"))
 +
}
 +
}
 +
if (dselected=="auto" && typeof setalready=="undefined" && this.isSelected(menuitems[i].href)){
 +
menuitems[i].parentNode.className+=" selected default"
 +
var setalready=true
 +
}
 +
else if (parseInt(dselected)==i)
 +
menuitems[i].parentNode.className+=" selected default"
 +
}
 +
}
 +
 +
}
 +
</script>
 +
<style>
 +
.ddcolortabs{
 +
padding: 0;
 +
width: 100%;
 +
background: transparent;
 +
voice-family: "\"}\"";
 +
voice-family: inherit;
 +
}
 +
 +
.ddcolortabs ul{
 +
font: normal 11px Arial, Verdana, sans-serif;
 +
margin:0;
 +
padding:0;
 +
list-style:none;
 +
}
 +
 +
.ddcolortabs li{
 +
display:inline;
 +
margin:0 2px 0 0;
 +
padding:0;
 +
text-transform:uppercase;
 +
}
 +
 +
 +
.ddcolortabs a{
 +
float:left;
 +
color: white;
 +
background: black url(media/color_tabs_left.gif) no-repeat left top;
 +
margin:0 2px 0 0;
 +
padding:0 0 1px 3px;
 +
text-decoration:none;
 +
letter-spacing: 1px;
 +
}
 +
 +
.ddcolortabs a span{
 +
float:left;
 +
display:block;
 +
background: transparent url(media/color_tabs_right.gif) no-repeat right top;
 +
padding: 4px 8px 2px 7px;
 +
}
 +
 +
.ddcolortabs a span{
 +
float:none;
 +
}
 +
 +
.ddcolortabs a:hover{
 +
background-color: #591f20;
 +
}
 +
 +
.ddcolortabs a:hover span{
 +
background-color: #591f20;
 +
}
 +
 +
.ddcolortabs .selected a, #ddcolortabs .selected a span{ /*currently selected tab*/
 +
background-color: #591f20;
 +
}
 +
 +
.ddcolortabsline{
 +
clear: both;
 +
padding: 0;
 +
width: 100%;
 +
height: 8px;
 +
line-height: 8px;
 +
background: black;
 +
border-top: 1px solid #fff; /*Remove this to remove border between bar and tabs*/
 +
}
 +
 +
/* ######### Style for Drop Down Menu ######### */
 +
 +
.dropmenudiv_a{
 +
position:absolute;
 +
top: 0;
 +
border: 1px solid black; /*THEME CHANGE HERE*/
 +
border-top-width: 8px; /*Top border width. Should match height of .ddcolortabsline above*/
 +
border-bottom-width: 0;
 +
font:normal 12px Arial;
 +
line-height:18px;
 +
z-index:100;
 +
background-color: white;
 +
width: 200px;
 +
visibility: hidden;
 +
}
 +
 +
 +
.dropmenudiv_a a{
 +
width: auto;
 +
display: block;
 +
text-indent: 5px;
 +
border-top: 0 solid #678b3f;
 +
border-bottom: 1px solid #678b3f; /*THEME CHANGE HERE*/
 +
padding: 2px 0;
 +
text-decoration: none;
 +
color: black;
 +
}
 +
 +
* html .dropmenudiv_a a{ /*IE only hack*/
 +
width: 100%;
 +
}
 +
 +
.dropmenudiv_a a:hover{ /*THEME CHANGE HERE*/
 +
background-color: #8a3c3d;
 +
color: white;
 +
}
 +
</style>
 +
</head>
 +
 +
<!-- CSS for Drop Down Tabs Menu #1 -->
 +
<link rel="stylesheet" type="text/css" href="ddcolortabs.css" />
 +
 +
<div id="colortab" class="ddcolortabs">
 +
<ul>
 +
<li><a href="https://2008.igem.org/Team:Edinburgh" title="Home"><span>Home</span></a></li>
 +
<li><a href="https://2008.igem.org/Team:Edinburgh/Project" title="Project" rel="dropmenu1_a"><span>The Project</span></a></li>
 +
<li><a href="https://2008.igem.org/Team:Edinburgh/Team" title="Team" ><span>The Team</span></a></li>
 +
<li><a href="https://2008.igem.org/Team:Edinburgh/Modeling" title="Modeling" rel="dropmenu2_a"><span>Modeling</span></a></li>
 +
<li><a href="https://2008.igem.org/Team:Edinburgh/Notebook" title="Notebook"><span>Notebook</span></a></li>
 +
</ul>
 +
</div>
 +
<div class="ddcolortabsline">&nbsp;</div>
 +
<div id="dropmenu1_a" class="dropmenudiv_a">
 +
<a href="https://2008.igem.org/Team:Edinburgh/Team">Overview</a>
 +
<a href="https://2008.igem.org/Team:Edinburgh/Team">Step1</a>
 +
<a href="https://2008.igem.org/Team:Edinburgh/Team">Step2</a>
 +
</div>
 +
<script type="text/javascript">
 +
//SYNTAX: tabdropdown.init("menu_id", [integer OR "auto"])
 +
tabdropdown.init("colortab", 3)
 +
</script>
 +
</html>
 +
 +
==Modelling==
==Modelling==

Revision as of 15:56, 22 July 2008

Edinburgh iGem 2008

 


Modelling

Logo-edi.jpg


Equation of fermentation reaction/Metabism

CH1.8O0.5N0.2 + 0.41915O2 = 0.62CH1.77O0.49N0.24 + 0.0512NH3 + 0.2745H2O + 0.38CO2


Produce Process Model

Produce model.jpg