Team:Johns Hopkins/Notebook/GROUP 2: MATa Specific-promoters

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GROUP 2: MATa Specific-promoters

 Status report by Allison and Nate
 Part no.: BBa_K110008
 Part Description: MFA1 (L+R)
 Part Location: in a labeled box, second shelf from the top, -20
 degrees C refrigerator next to front door
 Date: 7/10/08
 PCR successful? Yes
 BioBricks 8 and 16
 BioBricks 8 and 16 Using Constant Annealing
 Short 2Way Stop, Alpha Promoters, & Sapphire FP
 Cloning of PCR product successful: in progress
 Sequencing of cloned PCR product successful: not done
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved: to be determined
 Current status of this part: PCR was being troubleshooted, appeared to
 have good results with regular PCR protocol (not touchdown) in which
 there was a constant annealing temperature of 55 degrees C - see gel
 Status report by Allison and Nate
 Part no.: BBa_K110016
 Part Description: Ste2 (R+L)
 Part Location: in a labeled box, second shelf from the top, -20
 degrees C refrigerator next to front door
 Date: 7/10/08
 PCR successful? Yes
 BioBricks 8 and 16
 BioBricks 8 and 16 Using Constant Annealing
 Short 2Way Stop, Alpha Promoters, & Sapphire FP
 Cloning of PCR product successful: in progress
 Sequencing of cloned PCR product successful: not done
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved: to be determined
 Current status of this part: Both PCR protocols (touchdown and second
 PCR with constant annealing temperature) produced product of the
 correct size. BBa_K110016 was used as a control in the second PCR with
 BBa_K110008.
 Status report by Allison and Nate
 Part no.: BBa_K110008
 Part Description: MFA1 (L+R)
 Part Location: same as above, plates are at 4 degrees refrigerator near front door
 Date: 7/14/08
 PCR successful? Yes
 Cloning of PCR product of successful? There were mainly light blue colonies 
  (only a couple white colonies)
 Sequencing of cloned PCR product successful: not done
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved: Ligation
 Current status of this part: plates are at 4 degrees; another ligation/transformation 
  will be completed soon
 Status report by Allison and Nate
 Part no.: BBa_K110016
 Part Description: Ste2 (R+L)
 Part Location: in a labeled box, second shelf from the top, -20 degrees C refrigerator next to 
  front door; plates at 4 degrees
 Date: 7/14/08
 PCR successful? Yes
 Cloning of PCR product successful: There were many blue colonies (similar to the plate of BB_K110008)
 Sequencing of cloned PCR product successful: not done
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved: Ligation
 Current status of this part: plates are at 4 degrees; another ligation/transformation 
  will be completed soon
 Status report by Allison and Nate
 Part no.: BBa_K110008
 Part Description: MFA1 (L+R)
 Part Location: same as above, plates are at 4 degrees refrigerator near front door
 Date: 7/22/08
 PCR successful? Yes 
 (http://baderlab.bme.jhu.edu:8888/moodle18/mod/data/view.php?d=4&mode=single&page=2
 Cloning of PCR product of successful? Yes (approx 60 white colonies between two plates)
 Sequencing of cloned PCR product successful: not done
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved:
 Current status of this part: 12 mini preps and the restriction digestion were completed;
 preparing to send 3 samples to be sequenced
 (http://baderlab.bme.jhu.edu:8888/moodle18/mod/data/view.php?d=4&rid=1478)</b>
 Status report by Allison and Nate
 Part no.: BBa_K110016
 Part Description: Ste2 (R+L)
 Part Location: in a labeled box, second shelf from the top, -20 degrees C refrigerator next to 
  front door; plates at 4 degrees
 Date: 7/22/08
 PCR successful? Yes
 Cloning of PCR product successful: Yes (approx 20 white colonies on one plate)
 Joining of validated part to adjacent part(s) status: not done
 Problems to be solved:
 Current status of this part: 12 mini preps and the restriction digestion were completed;
 preparing to send 3 samples to be sequenced
 (http://baderlab.bme.jhu.edu:8888/moodle18/mod/data/view.php?d=4&rid=1478)