Team:Paris/Notebook/Freezer

From 2008.igem.org

Revision as of 12:54, 6 October 2008 by Philippe b (Talk | contribs)

Contents

Last number

(check on 11 sept 2008, subject to change by unwritten data on the wiki !! FC)

Last Ligation number used
213


Last PCR number used
154


Last Digestion number used
202


Last Miniprep number used
209


Last Strain number used
209

PCR products

PCR products
Number Name Oligo F Oligo R Template Length Comments Product Left ? [DNA]µg/mL Date
PCR124 pFlgA O100 O101 - 261pb yes 0.5 August 7
PCR125 pFlgB O102 O103 - 261pb yes 0.5 August 7
PCR126 pFlhB O108 O109 - 260pb yes 0.5 August 7
PCR127 FlhDC O132 O131 MG1655 no August 8
PCR128 OmpR* O138 O139 Strain OmpR* 700pb yes 150 August 8
PCR129 EnvZ* O126 O127 Strain EnvZ* 1400pb yes 100 August 8
PCR130 E0240 rbs+ O141 O140 MP143 900pb no August 11
PCR131 FlhD rbs- O132 O133 MG1655 350pb no August 11
PCR132 pFlhD rbs- O130 O131 MG1655 600pb no August 11
PCR133 FlhDC + prom O110 O131 MG1655 1300pb no August 11
PCR134 FlhDC + prom O111 O131 MG1655 no August 11
PCR135 pFliL O124 O125 MG1655 yes August 11
PCR136 pFlhDC O110 O113 MG1655 yes August 11
PCR137 pFlhDC O 111 O 113 MG1655 yes August 11
PCR138 FlhDC (RBS -) O 132 O 131 MG 1655 yes August 15
PCR139 pFlhDC (URI) O 110 O 113 PCR 130 yes August 15
PCR140 FlhDC (RBS -) O 132 O 131 PCR 130 yes August 15
PCR141 Gene FlhDC + rbs nat O 134 O 131 MG1655 1000pb yes August 26
PCR142 pFliA + rbs nat O 145 O 144 MG1655 325pb yes August 26
PCR143 pFliA sans rbs O 145 O 146 MG1655 310pb yes August 26
PCR144 pFliA + Gene FliA O 145 O 151 MG1655 1100pb yes August 26
PCR145 PCRFliA1 O 148 O 152 MG1655 150pb yes August 26
PCR146 PCRFliA2 O 153 O 150 MG1655 670pb yes August 26
PCR 147 EnvZ* O 126 O 127 S 120 1412 bp yes 150 August 26
PCR 148 OmpR* O 138 O 139 S 119 789 bp yes 101 August 26
PCR 149 pFlhDC (Soutourina +RBS) O 154 O 113 MG1655 450 bp yes August 26
PCR 151 pFLiA without nat. rbs O 145 O 146 MG1655 310 bp yes 34 August 26
PCR 152 pFliA rbs nat. O 145 O 144 MG1655 325 bp yes 19 August 26
PCR 153 pFliA+Gene FliA non-mutated O 145 O 151 MG1655 1100 bp yes 39 August 26
PCR 154 Gene FliA mutated (EcoRI/PstI) O 148 O 150 MG1655 800 bp 154.1, 154.2, 154.3 yes 50 August 26

Ligations: Constructions realised

Plasmids: MiniPrep Products 2008
Number Plasmid Strain Miniprep Description Digestion comment Date
L100 pSB1A2 S146 MP147 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
rbs TetR - ECFP
D110 (BV) - D130 (BI) August 13
L101 pSB1A2 S147 MP148 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
rbs TetR - GFP tripart
D110 (BV) - D131 (BI) DO NOT WORK !!!! August 13
L102 pSB1A2 S123 MP124 Part icon rbs.pngPart icon reporter.png
Strong rbs - YFP
D129 (BV) - D118 (BI) August 1
L103 pSB1A2 S124 MP125 Part icon rbs.pngPart icon reporter.png
Strong rbs - mRFP
D129 (BV) - D122 (BI) August 1
L104 pSB1A2 S125 MP126 Part icon rbs.pngIcon coding.png
Strong rbs - lasR activator
D129 (BV) - D114 (BI) August 1
L105 J61002 S126 MP127 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Strong promoter - ECFP
D123 (BV) - D130 (BI) August 1
L106 J61002 S127 MP128 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Strong promoter - gfp Tripart
D123 (BV) - D131 (BI) August 1
L107 J61002 S128 MP129 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Strong promoter - ECFP
D103 (BV) - D130 (BI) August 1
L108 J61002 S129 MP130 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Strong promoter - gfp Tripart
D103 (BV) - D131 (BI) August 1
L109 August
L110 J61002 S130 MP131 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Medium promoter - gfp Tripart
D124 (BV) - D131 (BI) August 1
L111 J61002 S131 MP132 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Weak promoter - ECFP
D104 (BV) - D130 (BI) August 1
L112 J61002 S132 MP133 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
Weak promoter - GFP tripart
D104 (BV) - D131 (BI) August 1
L113 August
L114 pSB2K3 S148 MP149 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
AracpBAD - gfp tripart
D126 (BV) - D131 (BI) August 13
L115 pSB1A2 S133 MP134 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
pLas - ECFP
D105 (BV) - D130 (BI) August 1
L116 pSB1A2 S134 MP135 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
pLas - gfp Tripart
D105 (BV) - D131 (BI) August 1
L117 pSB1AK3 S135 MP136 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png
yfp - Double Terminator
D125 (FV) - D117 (FI) August 1
L118 pSB1AK3 S136 MP137 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png
rfp - Double Terminator
D125 (FV) - D121 (FI) August 1
L119 pSB1AK3 S137 MP138 Icon coding.pngPart icon terminator.pngPart icon terminator.png
lasR activator + LVA - Double Terminator
D125 (FV) - D113 (FI) August 1
L120 pSB1A2 S149 MP150 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
tetR repressible promoter - ECFP
D106 (BV) - D130 (BI) August 13
L121 pSB1A2 S138 MP139 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
pTet - gfp tripart
D106 (BV) - D131 (BI) August 1
L122 pSB1A2 S150 MP151 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
RBS-lasI - ECFP
D107 (BV) - D130 (BI) August 13
L123 pSB1A2 S151 MP152 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
RBS lasI - gfp tripart
D107 (BV) - D131 (BI) August 13
L124 pSB1A2 S139 MP140 Part icon rbs.pngPart icon reporter.png
Strongest RBS - rfp
D102 (BV) - D122 (BI) August 1
L125 pSB1A2 S140 MP141 Part icon rbs.pngPart icon reporter.png
Strongest RBS - yfp
D102 (BV) - D118 (BI) August 1
L126 pSB1A2 S152 MP153 Part icon rbs.pngIcon coding.png
Strongest RBS (1)- LasR activator (+LVA)
D102 (BV) - D114 (BI) August 13
L127 August
L128 J61002 S143 MP144 Part icon regulatory.pngPart icon reporter.png
pFlgA-RFP
D132 (FI) - D136 (FV) August 12
L129 J61002 S144 MP145 Part icon regulatory.pngPart icon reporter.png
pFlgB-RFP
D133 (FI) - D136 (FV) August 12
L130 J61002 S145 MP146 Part icon regulatory.pngPart icon reporter.png
pFlhB-RFP
D134 (FI) - D136 (FV) wrong sequencing August 12
L131 August
L132 pSB1A2 S153 MP154 Icon coding.png
flhDC
D142(FV) - D139(FI) August 13
L133 pSB1A2 S154 MP155 Icon coding.png
OmpR*
D142(FV) - D140(FI) WT sequence
(August 19)
August 13 ; August 19
L134 pSB1A2 S155 MP156 Icon coding.png
EnvZ*
D142(FV) - D141(FI) lacks about 300 bp in EnvZ*
(August 19)
August 13 August 19
L135 August
L136 August
L137 August
L138 pSB3K3 S156 MP157 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
gfp generator (E0240)
D137(FV) - D138(FI) August 13
L139 pSB3K3 S159 MP158 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
E0240 RBS+
D140 (PstI) - D144 (ES) seems to have the
plasmid without the
insert and one
with the insert
August 15
L140 August
L141 pSB1A2 S160 MP159 Icon coding.png
flhD
D142 (ES) - D145 (ES) has not been
sequenced
August 15
L142 pSB1A2 S161 MP160 Icon regulatory.pngIcon rbs.pngIcon coding.png
flhDC+promotor
D143 (ES) - D145 (ES) does not have
the insert
August 15
L143 didn't work August 14
L144 August
L145 August
L146 August
L147 August
L148 August
L149 August
L150 pSB1A2 MP161 Icon regulatory.pngIcon rbs.pngIcon coding.pngIcon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
pLas + rbs-tetR-gfp tripart
D105 (BV) - D146 (BI) incorrect clone
-> to do again
August 19
L151 pSB1AK3 MP162 Icon rbs.pngIcon coding.pngPart icon terminator.pngPart icon terminator.png
rbs-lasR + double terminator
D147 (FI) - D125 (FV) August 19
L152 August
L153 August
L154 August
L155 August
L156 August
L157 August
L158 August
L159 August
L160 August
L161 August
L162 August
L163 August
L164 August
L165 August
L166 pSB1A2 MP172 Part icon rbs.pngIcon coding.png
RBS(B0032) - tetR
August 25
L167 pSB1A2 MP171 Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.pngPart icon regulatory.png
gfp generator(E0240) - pTet
August 25
L168 September
L169 September
L170 September
L171 September
L172 September
L173 September
L174 September
L175 September
L176 D125 (v) + D162 (i) September
L177 September
L178 September
L179 September
L180 D166 (v) + D109.2 (i) September
L181 D199 (v) + D109.2 (i) September
L182 D187 (v) + D109.2 (i) September
L183 September
L184 September
L185 September
L186 D179 (v) + D205 (i) September
L187 ("L1") September
L188 ("L2") September
L189 ("L3") September
L190 ("L4") D199 (v) + D (i) September
L191 ("L5") September
L192 ("L6") September
L193 ("L7") September
L194 ("L8") September
L195 ("L9") D187 (v) + D194 (i) September
L196 ("L10") September
L September
L September
L September

Plasmids: MiniPrep Products

Plasmids: MiniPrep Products 2008
Number Name Plamsid Biobricks Description Products in use/comments Conc. ug/mL Date
MP100 B0034 pSB1A2 Part icon rbs.png Strongest RBS (Efficiency = 1) July 26
MP101.1 J23101 J61002 Part icon regulatory.png Strongest Constitutive promoter July 26 333 July 22, July 23, July 26
MP101.2 finished
MP101.4 200
MP102 J23109 J61002 Part icon regulatory.png Weak Constitutive promoter July 26 July 22, July 26
MP103 R0079 pSB1A2 Part icon regulatory.png promoter pLas (lasr & PAI regulated) July 26 July 23, July 26
MP104.1 R0040 pSB1A2 Part icon regulatory.png tetR repressible promoter July 26 145 July 23, July 26
MP104.3 147
MP104.4 51
MP105.1 S03154 pSB1A2 Part icon rbs.pngIcon coding.png B0034(rbs) ->LasI 34 July 26
MP105.2 31
MP106.1 S03879 pSB1A2 Part icon rbs.pngIcon coding.png B0034(rbs) -> TetR 80 August 24
MP106.3 40
MP107 C0079 pSB2K3 Icon coding.png lasR activator with LVA Tag July 23
MP108 C0179 pSB1A2 Icon coding.png lasR activator July 26 July 22, July 23, July 26
MP109 E0030 pSB1AK3 Part icon reporter.png YFP July 26
MP110 E0040 pSB1A2 Part icon reporter.png GFP July 26 July 23, July 26
MP111 E1010 pSB2K3 Part icon reporter.png mRFP July 26 July 23, July 26
MP112 OmpR M57I Icon coding.png July 23
MP113 EnvZ I281S Icon coding.png July 23
MP114.1 C0040 pSB1A2 Icon coding.png tetR repressor 173 July 23
MP114.2 263
MP115 pSB1A3 Icon plasmid.png July 23
MP116 J23100 J61002 Part icon regulatory.png Strong constitutive promoter in J61002 July 26
MP117 J23107 J61002 Part icon regulatory.png Medium constitutive promoter in J61002 July 26 July 24, July 26
MP118.1 B0015 pSB1AK3 Part icon terminator.pngPart icon terminator.png Double terminator July 26 220 July 24, July 26
MP118.3 187
MP119.1 I0500 pSB2K3 Part icon regulatory.png AraC pBAD July 26 42 July 24, July 26
MP119.2 26
MP119.3 39
MP120 B0030 pSB1A2 Part icon rbs.png Strong RBS (Efficiency = 0,6) July 26
MP121 E0422 pSB1A2 Part icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png ECFP (RBS+LVA+Double Term) July 26 July 24, July 26
MP122 E0840 pSB1A2 Part icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png gfp tri-part; strong rbs July 26
MP123 J61002 Icon plasmid.png August 5
MP124 L102 pSB1A2 Part icon rbs.pngPart icon reporter.png Strong rbs - YFP
D129 (BV) - D118 (BI)
August 1
MP125 L103 pSB1A2 Part icon rbs.pngPart icon reporter.png Strong rbs - mRFP
D129 (BV) - D122 (BI)
August 1
MP126 L104 pSB1A2 Part icon rbs.pngIcon coding.png Strong rbs - lasR activator
D129 (BV) - D114 (BI)
August 1
MP127 L105 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - ECFP
D123 (BV) - D130 (BI)
August 1
MP128 L106 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - gfp Tripart
D123 (BV) - D131 (BI)
August 1
MP129 L107 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - ECFP
D103 (BV) - D130 (BI)
August 1
MP130 L108 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - gfp Tripart
D103 (BV) - D131 (BI)
August 1
MP131 L110 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Medium promoter - gfp Tripart
D124 (BV) - D131 (BI)
August 1
MP132 L111 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Weak promoter - ECFP
D104 (BV) - D130 (BI)
August 1
MP133 L112 J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Weak promoter - GFP tripart
D104 (BV) - D131 (BI)
August 1
MP134 L115 pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pLas - ECFP
D105 (BV) - D130 (BI)
August 1
MP135 L116 pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pLas - gfp Tripart
D105 (BV) - D131 (BI)
August 1
MP136 L117 pSB1AK3 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png yfp - Double Terminator
D125 (FV) - D117 (FI)
August 1
MP137 L118 pSB1AK3 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png rfp - Double Terminator
D125 (FV) - D121 (FI)
August 1
MP138 L119 pSB1AK3 Icon coding.pngPart icon terminator.pngPart icon terminator.png lasR activator + LVA - Double Terminator
D125 (FV) - D113 (FI)
August 1
MP139 L121 pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pTet - gfp tripart
D106 (BV) - D131 (BI)
August 1
MP140 L124 pSB1A2 Part icon rbs.pngPart icon reporter.png Strongest RBS - rfp
D102 (BV) - D122 (BI)
August 1
MP141 L125 pSB1A2 Part icon rbs.pngPart icon reporter.png Strongest RBS - yfp
D102 (BV) - D118 (BI)
August 1
MP142 pSB3K3 Icon plasmid.png August 8
MP143.1 E0240 pSB1A2 Part icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png gfp generator 138 August 8
MP143.2 150
MidiP144 L128 J61002 Part icon regulatory.pngPart icon reporter.png pFlgA-RFP
D132 (FI) - D136 (FV)
150
MP144.1 L128 J61002 Part icon regulatory.pngPart icon reporter.png pFlgA-RFP
D132 (FI) - D136 (FV)
MP144.3 ; MP144.4 127 August 12
MP144.2 166
MP144.3 163
MP144.4 154
MP145.1 L129 J61002 Part icon regulatory.pngPart icon reporter.png pFlgB-RFP
D133 (FI) - D136 (FV)
MP145.6 ; MP145.7 136 August 12
MP145.2 151
MP145.6 163
MP145.7 188
MP146.1 L130 J61002 Part icon regulatory.pngPart icon reporter.png pFlhB-RFP
D134 (FI) - D136 (FV)
MP146.1 ; MP146.2 298 August 12
MP146.2 142
MP146.7 170
MP146.8 143
MP147 L100 pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png rbs TetR - ECFP
D110 (BV) - D130 (BI)
August 13
MP148.1 L101 pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png rbs TetR - GFP tripart
D110 (BV) - D131 (BI) DO NOT WORK !!!!
MP148.2 ; MP148.3 109 August 13
MP148.2 123
MP148.3 123
MP149 L114 pSB2K3 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png AracpBAD - gfp tripart
D126 (BV) - D131 (BI)
August 13
MP150 L120 pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png tetR repressible promoter - ECFP
D106 (BV) - D130 (BI)
August 13
MP151 L122 pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png RBS-lasI - ECFP
D107 (BV) - D130 (BI)
August 13
MP152 L123 pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png RBS lasI - gfp tripart
D107 (BV) - D131 (BI)
August 13
MP153.1 L126 pSB1A2 Part icon rbs.pngIcon coding.png Strongest RBS (1)- LasR activator (+LVA)
D102 (BV) - D114 (BI)
MP153.1 ; MP153.3 100 August 13
MP153.2 131
MP153.3 113
MP154 L132 pSB1A2 Icon coding.png flhDC
D142(FV) - D139(FI)
August 13
MP155 L133 pSB1A2 Icon coding.png OmpR*
D142(FV) - D140(FI)
WT sequence (August 19) August 13 ; August 19
MP156 L134 pSB1A2 Icon coding.png EnvZ*
D142(FV) - D141(FI)
lacks about 300 bp in EnvZ* (August 19) August 13 August 19
MP157 L138 pSB3K3 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png gfp generator (E0240)
D137(FV) - D138(FI)
August 13
MP158 L139 pSB3K3 E0240 RBS+
D140 (PstI) - D144 (ES)
seems to have the plasmid without the insert and one with the insert August 15
MP159 L141 pSB1A2 flhD
D142 (ES) - D145 (ES)
has not been sequenced August 15
MP160 L142 pSB1A2 flhDC+promotor
D143 (ES) - D145 (ES)
does not have the insert August 15
MP161 L150 pSB1A2 Icon regulatory.pngIcon rbs.pngIcon coding.pngIcon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png pLas + rbs-tetR-gfp tripart
D105 (SP) - D146 (XP)
incorrect clone -> to do again August 19
MP162.1 L151.1 pSB1AK3 Icon rbs.pngIcon coding.pngPart icon terminator.pngPart icon terminator.png rbs-lasR + double terminator
D147 (ES) - D125 (EX)
151 August 19
MP162.2 172
MP162.3 149
MP163.1 B0032 pSB1A2 Icon rbs.png RBS 80 August 20
MP163.2 79
MP164 E0422 pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png RBS+ ECFP+ LVA+ term August 20
MP165 E0430 pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png RBS+ YFP+ LVA- term August 20
MP166 E0432 pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png RBS+ YFP LVA+ term BUT be careful , it doesn't work. See registry August 20
MP167 E0420 pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png RBS+ ECFP LVA- term August 20
MP168 I732078 pSB1A3 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png RBS+ mRFP LVA+ term August 20
MP171 L167 pSB1A2 gfp generator(E0240) - pTet
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.pngPart icon regulatory.png
gfp generator(E0240) - pTet August 25
MP172 L166 pSB1A2 RBS(B0032) - tetR
Part icon rbs.pngIcon coding.png
RBS(B0032) - tetR August 25
MP175 pFlhB pCR4Blunt-TOPO pFlhB
Icon regulatory.pngIcon rbs.png
pFlhB-RBS (WT) September 04
MP176 pFliA pCR4Blunt-TOPO pFliA
Icon regulatory.pngIcon rbs.png
pFliA-RBS (WT) September 04
MP177 pFlhDC pCR4Blunt-TOPO pFlhDC
Icon regulatory.pngIcon rbs.png
pFlhDC-RBS (WT) September 04
MP178 pFliL pCR4Blunt-TOPO pFliL
Icon regulatory.pngIcon rbs.png
pFliL-RBS (WT) September 04
MP179 RBS WT-FlhDC pCR4Blunt-TOPO RBS(FlhDC) - FlhDC
Part icon rbs.pngIcon coding.png
RBS(FlhDC) - FlhDC not mutated for the internal Pst1 site September 04
MP180 FliA2 pCR4Blunt-TOPO FliA
Icon coding.png
FliA mutated at EcoR1 and Pst1 internal site September 04
MP181 FliA3 pCR4Blunt-TOPO FliA3
Icon coding.png
FliA mutated at EcoR1 and Pst1 internal site September 04
MP182 EnvZ* pCR4Blunt-TOPO EnvZ*
Icon coding.png
EnvZ* the good one not mutated for the internal EcoR1 site September 04
MP183 OmpR WT pCR4Blunt-TOPO OmpR WT
Icon coding.png
OmpR WT not the mutated September 04
MP184 pFlgB pCR4Blunt-TOPO pFlgB
Icon regulatory.pngIcon rbs.png
pFlgB-RBS (WT) September 04
MP185 OmpR WT OmpR WT
Icon coding.png
OmpR WT not the mutated September 04
MP200 J23101 + RBS (B0032) + tet R J61002 Icon regulatory.pngIcon rbs.pngIcon coding.png J23101 + RBS (B0032) + tet R September 24
MP201 pFlgA-EnvZ* J61002 pFlgA-EnvZ*
Icon regulatory.pngIcon rbs.pngIcon coding.png
pFlgA(RBS WT)-EnvZ* September 24
MP202 L174; J23101-E0240 J61002 Strong constitutive promoter-GFP generator
Icon regulatory.pngIcon coding.png
J23101-E0240
September 26
MP207 pFliA J61002 pFliA
Icon regulatory.pngIcon rbs.png
pFliA-RBS (WT) October 04
MP208 pFlgA-EnvZ* pSB3K3 pFlgA-EnvZ*
Icon regulatory.pngIcon rbs.pngIcon coding.png
pFlgA(RBS WT)-EnvZ* October 04
MP209 pFlgA-EnvZ*-mRFP J61002 pFlgA-EnvZ*-mRFP
Icon regulatory.pngIcon rbs.pngIcon coding.pngIcon reporter.png
pFlgA(RBS WT)-EnvZ*-mRFP October 04

Digestion Products

(Legend: Vector, Insert) Ø

Digestion Products
Number Product Name Matrix Name Enzyme 1 Enzyme 2 Obs Size Matrix (bp) Size BB (bp) Description Product in use []ng/µL Date
D100.1 B0034 pSB1A2 XbaI PstI BI 2057 34 10 July 26
D100.2
D101 B0034 pSB1A2 EcoRI XbaI FV 2076 15 10 July 29
D102.1 B0034 pSB1A2 SpeI PstI BV 2077 14 10 July 26
August 15
D102.2
D103.1 J23101 J61002 SpeI PstI BV 2100 883 27 July 26
D103.2 35
D104.1 J23109 J61002 SpeI PstI BV 2100 883 20 July 26
D104.2
D105.1 R0079 pSB1A2 SpeI PstI BV 2222 14 5 July 26
D105.2
D106.1 R0040 pSB1A2 SpeI PstI BV 2119 14 8 July 26
D106.2
D107 S03154 pSB1A2 SpeI PstI BV 2750 14 August 23 5
12
July 26
July 23
D108.1 S03154 pSB1A2 XbaI PstI BI 2057 707 5 July 29
D108.2
D109 S03154 pSB1A2 EcoRI SpeI FI 2056 708 July 26 10 July 26
D110 S03879 pSB1A2 SpeI PstI BV 2768 14 August 23 20
8
19
July 26
August 23
August 28
D111.1 S03879 pSB1A2 XbaI PstI BI 2057 725 20 July 26
D111.2
D112 S03879 pSB1A2 EcoRI SpeI FI 2079 703 8 September 5
D113 C0079 pSB2K3 EcoRI SpeI FI 4402 779 20 July 26
D114 C0079 pSB2K3 XbaI PstI BI 4003 778 20 July 26
D115.1 C0179 pSB1A2 EcoRI SpeI FI 4402 746 - July 29
D115.2
D116.1 C0179 pSB1A2 XbaI PstI BI 4403 745 20 July 29
D116.1
D117 E0030 pSB1AK3 EcoRI SpeI FI 3166 746 5 July 29
D118 E0030 pSB2K3 XbaI PstI BI 3167 745 20 July 26
D119 E0040 pSB1A2 EcoRI SpeI FI 2056 743 10 July 26
D120 E0040 pSB1A2 XbaI PstI BI 2057 742 10 July 26
D121 E1010 pSB2K3 EcoRI SpeI FI 4402 704 10 July 26
D122 E1010 pSB1A2 XbaI PstI BI 4403 703 10 July 26
D123.1 J23100 J61002 SpeI PstI BV 2100 883 26 July 26
D123.2 23
D124.1 J23107 J61002 SpeI PstI BV 2100 883 15 July 26
D124.2
D125.1 B0015 pSB1AK3 EcoRI XbaI FV 3303 15 26
10
July 26
August 23
August 28
D125.2 24
3687
D126.1 I0500 pSB2K3 SpeI PstI BV 5621 14 10 July 26
D126.2
D127.1 B0030 pSB1A2 XbaI PstI BI 2057 37 10 July 26
D127.2
D128.1 B0030 pSB1A2 EcoRI XbaI FV 2079 15 10 July 29
D128.1
D129.1 B0030 pSB1A2 SpeI PstI BV 2080 14 10 July 29
D129.2
D130.1 E0422 pSB1A2 XbaI PstI BI 2057 939 10 July 26
D130.2
D130.3
D131.1 E0840 pSB1A2 XbaI PstI BI 2057 900 8 July 26
D131.2
D131.3
D132 pFlgA - EcoRI SpeI FI - 250 5 August 6
D133 pFlgB - EcoRI SpeI FI - 250 5 August 6
D134 pFlhB - EcoRI SpeI FI - 249 5 August 6
D135 pFlhDC - EcoRI SpeI FI - problem August 6
D136 - J61002 EcoRI SpeI FV 2925 - August 6
August 16
D137 pSB3K3 pSB3K3 EcoRI SpeI FV 2727 - August 6
D138 E0240 pSB1A2 EcoRI SpeI FI 899 - August 6
D139 flhDC - EcoRI PstI FI - 972 August 6
D140 E040 rbs+ - PstI PstI I - August 12
D141 flhD RBS - - EcoRI SpeI FI - August 12
D142 flhC RBS - - EcoRI SpeI FI - August 12
D143 flhDC + promoter - EcoRI SpeI FI - August 12
D144 pSB3K3 pSB3K3 EcoRI SpeI FI - August 12
D145 pSB1A2 pSB1A2 EcoRI SpeI FI - August 12
August 15
D146 MP148 pSB1A2 XbaI PstI BI 2057 1609 rbs TetR - GFP tripart
D110 (BV) - D131 (BI)
Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png
August 15
D147 MP153 pSB1A2 EcoRI SpeI FI 2056 799 Strongest RBS (1)- LasR activator (+LVA)
D102 (BV) - D114 (BI)
Part icon rbs.pngIcon coding.png
August 15
D149 pfliL - EcoRI SpeI FI - August 14
August 16
D150 pfliL - XbaI PstI BI - August 14
August 16
D152 pSB3K3 pSB3K3 XbaI PstI BI - August 14
D153 PCR 138 - gène flhDC - EcoRI SpeI FI - August 15
D154 PCR 140 - gène flhDC - EcoRI SpeI FI - August 15
D155 PCR 139 - pflhDC (URI) - EcoRI SpeI FI - August 15
D158 MP 155.1 - OmpR* pSB1A2 XbaI PstI BI - August 15
D159 MP 156.1 - EnvZ* pSB1A2 XbaI PstI BI - August 15
D161 MP 104 - pTet pSB1A2 SpeI PstI BV - 39 August 16
D162 MP 114 - TetR pSB1A2 EcoRI SpeI FI - 11 August 16
D163 MP 143 - gfp generator pSB1A2 XbaI PstI BI - August 23 14
11
August 16
August 23
D164 MP 101 - pJ23101 J61002 SpeI PstI BV - 3 August 16
D165 MP162.2 pSB1AK3 XbaI PstI BI 2057 798 rbs-lasR - double terminator
D147 (FI) - D125 (FV)
Part icon rbs.pngIcon coding.pngPart icon terminator.pngPart icon terminator.png
27 August 18
D166 MP 165.2 pSB1A2 EcoRI XbaI FV - 2942 RBS (B0034)+ YFP+ LVA- term B0015
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png

59
August 26
September 3
D179 MP3.4 or MP118 pSB1AK3 SpeI PstI BV B0015 (double terminator B0010-B0012)
Part icon terminator.pngPart icon terminator.png
August 20
D180 MP101.1 J61002 SpeI PstI BV promoter J23101
Part icon regulatory.png
August 20
D181 MP104.2 pSB1A2 EcoRI XbaI FV pTet (TetR repressible promoter)
Part icon regulatory.png
August 20
D182 MP114.1 pSB1A2 XbaI PstI BI TetR
Icon coding.png
August 20
D183 MP119.3 - XbaI PstI BI pBad promoter
Part icon regulatory.png
August 20
D184 MP143.1 pSB2K3 EcoRI SpeI FI gfp generator
Part icon reporter.png
August 18
D185 MP163.1 pSB1A2 SpeI PstI BV B0032 RBS
Part icon rbs.png
August 18
D187 MP168.1 pSB1A3 EcoRI XbaI FV RBS (B0034)+ mRFP LVA+ term B0015
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png

43

September 3
D188 PCR 138 - XbaI PstI Insert - 767 OmpR*
Icon coding.png
August 26
D189 MP 101.2 J61002 XbaI PstI Vector - 2073 pSB1A2
Icon plasmid.png
August 26
D191 MP114.2 pSB1A2 SpeI PstI BV 2724 tetR
Icon coding.png
22 August 29
D192 MP144.2 J61002 EcoRI XbaI FV 2267 FlgA
Part icon regulatory.png
26 August 29
D193 MP171 pSB1A2 EcoRI SpeI FI 961 gfp generator(E0240) - pTet
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.pngPart icon regulatory.png
9,5 August 29
D194 MP172.2 pSB1A2 EcoRI SpeI FI 704 RBS(B0032) - tetR
Part icon rbs.pngIcon coding.png
13 August 29
D195 MP172.2 pSB1A2 XbaI PstI BI 703 RBS(B0032) - tetR
Part icon rbs.pngIcon coding.png
11 August 29
D196 MP104.2 pSB1A2 SpeI PstI BV 2119 pTet
Part icon regulatory.png
45 September 3
D197 MP157.2 pSB3K3 XbaI PstI BI 898 gfp generator(E0240)
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
12 September 3
D198 MP164.2 pSB1A2 EcoRI XbaI FV 2981 RBS (B0034)+ ECFP+ LVA+ term B0015
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
36 September 3
D199 MP167.1 pSB1A2 EcoRI XbaI FV 2942 RBS (B0034)+ ECFP LVA- term (B0015)
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
61 September 3
D200 MP171.2 pSB1A2 XbaI PstI BI 960 gfp generator(E0240) - pTet
Part icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.pngPart icon regulatory.png
43 September 3
D201 MP114.2 pSB1A2 EcoRI XbaI FV 2724 tetR
Icon coding.png
13 August 29
D202 MP101.1 J61002 EcoRI nothing 2984 25 September 8
D203 MP101.2 J61002 BspHI nothing 1870
1008
105
September 11
D204 MP144 J61002 SpeI PstI September 22
D205 MP101 J61002 XbaI PstI September 22
D206 MP179 XbaI PstI September 22
D207 MP182.3 XbaI PstI September
D208 MP175 EcoRI SpeI September
D209 MP144 J61002 EcoRI SpeI September
D210 MP178 EcoRI SpeI September

Strains (glycerol stock)

Strains glycerol stock
Number Name Biobricks Description Verified clone Date
S103 I0500 in pSB2K3 Part icon regulatory.png AraC pBAD July 23
S106 E0840 in pSB1A2 Part icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png ECFP (RBS+LVA+ Double Term) July 23
S107 B0034 in pSB1A2 Part icon rbs.png Strongest RBS (Efficiency = 1) July 23
S108 R0079 in pSB1A2 Part icon regulatory.png promoter pLas (lasr & PAI regulated) July 23
S109 J23101 in J61002 Part icon regulatory.png Strongest Constitutive promoter July 23
S110 J23109 in J61002 Part icon regulatory.png Weak Constitutive promoter July 23
S111 R0040 in pSB1A2 Part icon regulatory.png tetR repressible promoter July 23
S112 S03154 in pSB1A2 Part icon rbs.pngIcon coding.png B0034(rbs) ->LasI July 23
S113 S03879 in pSB1A2 Part icon rbs.pngIcon coding.png B0034(rbs) -> TetR July 23
S114 C0079 in pSB2K3 Icon coding.png lasR activator with LVA Tag July 23
S115 C0179 in pSB1A2 Icon coding.png lasR activator July 23
S116 E0030 in pSB1AK3 Part icon reporter.png YFP July 23
S117 E0040 in pSB1A2 Part icon reporter.png GFP July 23
S118 E1010 in pSB2K3 Part icon reporter.png mRFP July 23
S119 OmpR M57I Icon coding.png July 23
S120 EnvZ I281S Icon coding.png July 23
S121 C0040 in pSB1A2 Icon coding.png tetR repressor July 23
S122 pSB1A3 Icon plasmid.png July 23
S123 L102 in pSB1A2 Part icon rbs.pngPart icon reporter.png Strong rbs - YFP
D129 (BV) - D118 (BI)
Aug 1
S124 L103 in pSB1A2 Part icon rbs.pngPart icon reporter.png Strong rbs - mRFP
D129 (BV) - D122 (BI)
Aug 1
S125 L104 in pSB1A2 Part icon rbs.pngIcon coding.png Strong rbs - lasR activator
D129 (BV) - D114 (BI)
Aug 1
S126 L105 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - ECFP
D123 (BV) - D130 (BI)
Aug 1
S127 L106 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - gfp Tripart
D123 (BV) - D131 (BI)
Aug 1
S128 L107 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strongest promoter - ECFP
D103 (BV) - D130 (BI)
Aug 1
S129 L108 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Strong promoter - GFP tripart
D103 (BV) - D131 (BI)
Aug 1
S130 L110 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Medium promoter - gfp tripart
D124 (BV) - D131 (BI)
Aug 1
S131 L111 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Weak promoter - ECFP
D104 (BV) - D130 (BI)
Aug 1
S132 L112 in J61002 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png Weak promoter - gfp Tripart
D104 (BV) - D131 (BI)
Aug 1
S133 L115 in pSB1A2 Part icon reporter.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pLas - ECFP
D105 (BV) - D130 (BI)
Aug 1
S134 L116 in pSB1A2 Part icon reporter.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pLas - gfp Tripart
D105 (BV) - D131 (BI)
Aug 1
S135 L117 in pSB1AK3 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png yfp - Double Terminator
D125 (FV) - D117 (FI)
Aug 1
S136 L118 in pSB1AK3 Part icon reporter.pngPart icon terminator.pngPart icon terminator.png rfp - Double Terminator
D125 (FV) - D121 (FI)
Aug 1
S137 L119 in pSB1AK3 Icon coding.pngPart icon terminator.pngPart icon terminator.png LasR activator + LVA - Double terminator
D125 (FV) - D113 (FI)
Aug 1
S138 L121 in pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png pTet - gfp Tripart
D106 (BV) - D131 (BI)
Aug 1
S139 L124 in pSB1A2 Part icon rbs.pngPart icon reporter.png Strongest rbs - mRFP
D102 (BV) - D122 (BI)
Aug 1
S140 L125 in pSB1A2 Part icon rbs.pngPart icon reporter.png Strongest rbs - yfp
D102 (BV) - D118 (BI)
Aug 1
S141 MG1655 Aug 7
S142 J61002 Icon plasmid.png Aug 7
S143 L128 in J61002 Part icon regulatory.pngPart icon reporter.png pFlgA-RFP
D132 (FI) - D136 (FV)
MP144.3 ; MP144.4 August 12
S144 L129 in J61002 Part icon regulatory.pngPart icon reporter.png pFlgB-RFP
D133 (FI) - D136 (FV)
MP145.6 ; MP145.7 August 12
S145 L130 in J61002 Part icon regulatory.pngPart icon reporter.png pFlhB-RFP
D134 (FI) - D136 (FV)
MP146.1 ; MP146.2 August 12
S146 L100 in pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png rbs TetR - ECFP
D110 (BV) - D130 (BI)
August 13
S147 L101 in pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png rbs TetR - GFP tripart
D110 (BV) - D131 (BI)
August 13
S148 L114 in pSB2K3 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png AracpBAD - gfp tripart
D126 (BV) - D131 (BI)
August 13
S149 L120 in pSB1A2 Part icon regulatory.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png tetR repressible promoter - ECFP
D106 (BV) - D130 (BI)
August 13
S150 L122 in pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png RBS-lasI - ECFP
D107 (BV) - D130 (BI)
August 13
S151 L123 in pSB1A2 Part icon rbs.pngIcon coding.pngPart icon rbs.pngPart icon reporter.pngPart icon terminator.pngPart icon terminator.png RBS lasI - gfp tripart
D107 (BV) - D131 (BI)
August 13
S152 L126 in pSB1A2 Part icon rbs.pngIcon coding.png Strongest RBS (1)- LasR activator (+LVA)
D102 (BV) - D114 (BI)
August 13
S153 L132 in pSB1A2 Icon coding.png flhDC
D142(FV) - D139(FI)
August 13
S154 L133 in pSB1A2 Icon coding.png OmpR*
D142(FV) - D140(FI)
August 13
S154 L133.1 in pSB1A2 Icon coding.png OmpR*
D142(FV) - D140(FI)
WT sequence August 19
S155 L134 in pSB1A2 Icon coding.png EnvZ*
D142(FV) - D141(FI)
August 13
S155 L134.2 in pSB1A2 Icon coding.png EnvZ*
D142(FV) - D141(FI)
lacks about 300 bp in EnvZ* August 19
S156 L138 in pSB3K3 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png gfp generator (E0240)
D137(FV) - D138(FI)
August 13
S157 E0240 in pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png GFP generator August 15
S158 pSB3K3 Icon plasmid.png plasmid August 15
S159.1 L139.1 in pSB3K3 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png E0240 RBS+
D140 (PstI) - D144 (ES)
seems to have the plasmid without the insert and one with the insert August 15
S159.2 incorrect clone
S160.1 L141.1 in pSB1A2 Icon coding.png flhD
D142 (ES) - D145 (ES)
has not been sequenced August 15
S160.2 has not been sequenced
S160.3 has not been sequenced
S161.1 L142.7 in pSB1A2 Icon regulatory.png flhDC+promotor
D143 (ES) - D145 (ES)
does not seem to have the insert August 15
S161.2 incorrect clone
S162 L151.1 in pSB1AK3 Icon rbs.pngIcon coding.pngPart icon terminator.pngPart icon terminator.png rbs-lasR + double terminator
D147 (ES) - D125 (EX)
August 18
S163 B0032 in pSB1A2 Icon rbs.png medium rbs (efficiency = 0,3) August 20
S164 E0422 in pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png strongest rbs ECFP LVA+ double terminator August 20
S165 E0430 in pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png strongest rbs YFP LVA- double terminator August 20
S166 E0432 in pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png strongest rbs YFP LVA+ double terminator August 20
S167 E0420 in pSB1A2 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png
strongest rbs ECFP LVA- double terminator August 20
S168 I732078 in pSB1A3 Icon rbs.pngIcon reporter.pngPart icon terminator.pngPart icon terminator.png strongest rbs mRFP LVA+ double terminator August 20
S200 L179 in J61002 Icon regulatory.pngIcon rbs.pngIcon coding.png J23101 + RBS (B0032) + tet R September 24
S201.1 pFlgA(+RBS)-envZ* in J61002 Icon regulatory.pngIcon coding.png pFlgA(+RBS)-envZ* September 24
S201.2
S201.3
S201.4
S201.6
S207 pFliA in J61002 Icon regulatory.pngIcon rbs.png pFliA-RBS (WT) October 04
S208 pFlgA-EnvZ* in pSB3K3 Icon regulatory.pngIcon rbs.pngIcon coding.png pFlgA(RBS WT)-EnvZ* October 04
S209 pFlgA-EnvZ*-mRFP in J61002 Icon regulatory.pngIcon rbs.pngIcon coding.pngIcon reporter.png pFlgA(RBS WT)-EnvZ*-mRFP October 04