Team:Paris/Perspectives

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(Example of an application: Metabolic engineering of polyhydroxyalkanoate biosynthesis pathways)
(Applying bacterioclock to metabolic engineering of polyhydroxyalkanoate biosynthesis pathways)
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==  Applying bacterioclock to metabolic engineering of polyhydroxyalkanoate biosynthesis pathways ==
 
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Human overpopulation combined with the current lifestyle urges the rational, efficient, and sustainable use of natural resources to produce environmentally friendly plastic materials.
 
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One illustrative example is polyhydroxyalkanoic acids (PHAs), whose production/degradation cycle reduces undesirable wastes and emissions.
 
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The biosynthesis of this polymer is currently subject to intensive work.
 
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It consists in expressing in appropriate quantities of 3 enzymes  PhaA ,PhaB and PhaC that sequentialy process AcetylcoA into its final product PHA.
 
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This biosynthesis is subjected to two contraints :
 
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* Intermediate products of this pathway are used in alternatives competing metabolic pathways,
 
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* Only the final product is of interest,so that all intermediates products need to be transformed into PHA.
 
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[[Image:PHA.jpg|center]]
 
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two strategies are commonly used in bioengineering of methabolics pathways :
 
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* Sequential expression of enzymes involved in the pathways,
 
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* Or constitutive expressions of all enzymes.
 
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Because of the above  mentioned limitations, none of these approches are adapted here .
 
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Using the sequential expression, intermediate products would accumulate and thus be consummed by competing pathways.
 
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Using the constitutive expression a mixture of final and intermediate product would necessarily be obtained.
 
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Our FIFO could be useful here.
 
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Indeed a FIFO expression pattern is intermediate between a purely sequential and a purely constitutive expression.
 
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At some point all enzymes are presents ( no accumulation of intermediate products ) and during the last step only the last enzyme (PhC) is presents ( all intermediate products are consummed).
 
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Moreover, the fact that our system oscillate could provide to the cell a metabolic recovering phase.
 
== More general applications ==  
== More general applications ==  

Revision as of 02:07, 30 October 2008


More general applications

As for the flagella biosynthesis our FIFO could be useful for many bottom-up assembled molecular machines that needs to be assembled in a precise order. As for the PHA biosynthesis a FIFO could be useful to any pathways subject to competitive alternative pathways and for wich intermediate products must be avoided. We believe that these 2 classes of applications are frequently encountered.