Team:The University of Alberta/Project

From 2008.igem.org

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==Journals==
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==WELCOME==
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===Synthetic Receptors===
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Well here you are on our project pageWe have 3 projectsOur major project is the Plastic project (Bisphenol Eh?), with two supplementary projects focused on an iGEM plant binary vector (Plant Project) and butanol synthesis (Butanerds).   Enjoy.
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<li>'''An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants''' Jianru Zuo, Wi-Wen Niu and Nam-Hai Chua <br>
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[http://www.blackwell-synergy.com/doi/full/10.1046/j.1365-313x.2000.00868.x?prevSearch=allfield%3A%28chua%29| Link]<br>
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===Protein Complementation===
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<li>'''A ToxR-based two-hybrid system for the detection of periplasmic and cytoplasmic protein–protein interactions in Escherichia coli: minimal requirements for specific DNA binding and transcriptional activation ''' Frank Hennecke, Arne Müller, Roland Meister, Astrid Strelowand Susanne Behrens1,6<br>
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[http://peds.oxfordjournals.org/cgi/content/full/18/10/477| Link]<br>
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<li>'''A -Galactosidase-Based Bacterial Two-Hybrid System To Assess Protein-Protein Interactions in the Correct Cellular Environment''' Jimmy Borloo, Lina De Smet, Bjorn Vergauwen, Jozef J. Van Beeumen, and Bart Devreese <br>
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[http://pubs.acs.org/cgi-bin/abstract.cgi/jprobs/2007/6/i07/abs/pr070037j.html| Link]<br>
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===Estrogen Receptors===
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<li>'''Estrogen response element-dependent regulation of transcriptional activation of estrogen receptors and ß by coactivators and corepressors''' C M Klinge, S C Jernigan, K A Mattingly, K E Risinger and J Zhang <br>[http://jme.endocrinology-journals.org/cgi/content/full/33/2/387| Link]<br>
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<li>'''Cooperative Coactivation of Estrogen Receptor in ZR-75 Human Breast Cancer Cells by SNURF and TATA-binding Protein''' Bradley Saville, Hetti Poukka, Mark Wormke, Olli A. Jänne, Jorma J. Palvimo, Matthew Stoner¶, Ismael Samudio, and Stephen Safe <br>[http://www.jbc.org/cgi/content/full/277/4/2485| Link]<br>
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<li>'''Identification of a Novel RING Finger Protein as a Coregulator in Steroid Receptor-Mediated Gene Transcription''' Anu-Maarit Moilanen, Hetti Poukka, Ulla Karvonen, Marika Häkli, Olli A. Jänne, and Jorma J. Palvimo<br> [http://mcb.asm.org/cgi/content/full/18/9/5128| Link]<br>
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<li>'''High level expression of full-length estrogen receptor in Escherichia coli is facilitated by the uncoupler of oxidative phosphorylation, CCCP ''' Zhang C.C.; Glenn K.A.; Kuntz M.A.; Shapiro D.J.1<br>
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[http://www.ingentaconnect.com/content/els/09600760/2000/00000074/00000004/art00120;jsessionid=22tnudxvlkl5k.alice?format=print| Link]<br>
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<li>'''Nuclear receptor coactivators function in estrogen receptor- and progestin receptor-dependent aspects of sexual behavior in female mice''' Heather A. Molenda-Figueiraa, Casey A. Williamsa, Andreana L. Griffina, Eric M. Rutledgeb, Jeffrey D. Blausteina and Marc J. Tetela <br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WGC-4K5HWP0-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=e1dd22c068b2b8288136f34eab6b6514| Link]<br>
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<li>'''Estrogen receptor interaction with estrogen response elements '''Carolyn M. Klinge<br>[http://nar.oxfordjournals.org/cgi/content/full/29/14/2905#SEC2| Link]<br>
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<li> '''A novel estrogen sensor based on recombinant Arxula adeninivorans cells''': Thomas Hahna, Kristina Taga, Klaus Riedela, Steffen Uhligb, Keith Baronianc, Gerd Gellissend and Gotthard Kunzea <br>[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFC-4J32JC8-1&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=2e20cf8bb0b465392aa852b10cda184b| Link]<br>
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<li>'''Estrogen receptor ß: an overview and update''': Chunyan Zhao, Karin Dahlman-Wright, and Jan-Åke Gustafsson<br>
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[http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2254331 Link]
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<li>'''A simple and extremely sensitive system for detecting estrogenic activity using transgenic Arabidopsis thaliana'''<br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WDM-4G314HG-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=1b0120c5a09915ebdf83160641791af0| Link]
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<li>'''How estrogen-specific proteins discriminate estrogens from androgens: a common steroid binding site architecture'''<br>
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[http://www.fasebj.org/cgi/content/full/17/10/1334 Link]
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===Bisphenol A===
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<li> '''Direct Evidence Revealing Structural Elements Essential for the High Binding Ability of Bisphenol A to Human Estrogen-Related Receptor-γ''': Hiroyuki Okada, Takatoshi Tokunaga, Xiaohui Liu, Sayaka Takayanagi, Ayami Matsushima, and Yasuyuki Shimohigashi<br> [http://www.ehponline.org/members/2007/10587/10587.html| Link]<br>
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<li>'''Endocrine disruptor bisphenol A strongly binds to human estrogen-related receptor γ (ERRγ) with high constitutive activity''':Sayaka Takayanagia, Takatoshi Tokunagaa, Xiaohui Liua, Hiroyuki Okadaa, Ayami Matsushimaa and Yasuyuki Shimohigashi <br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TCR-4KT6GTR-3&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=f58023e52189a0ee9ef7fd6263dff43f| Link]<br>
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<li>'''Aerobic degradation of bisphenol A by Achromobacter xylosoxidans strain B-16 isolated from compost leachate of municipal solid waste''':Chang Zhanga, Guangming Zenga, Li Yuana, Jian Yub, Jianbing Lia, Guohe Huanga, Beidou Xie and Hongliang Liua.
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[http://www.sciencedirect.com.login.ezproxy.library.ualberta.ca/science?_ob=ArticleURL&_udi=B6V74-4N0XNBH-2&_user=1067472&_coverDate=05%2F31%2F2007&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=60133aec998135b6157590f860fb5d3d| Link]
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<li>'''Molecular cloning and characterization of cytochrome P450 and ferredoxin genes involved in bisphenol A degradation in Sphingomonas bisphenolicum strain AO1''': M. Sasaki, T. Tsuchido and Y. Matsumura.
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<br>[http://www.blackwell-synergy.com/doi/abs/10.1111/j.1365-2672.2008.03843.x Link]<br>
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<li>'''Processing of Bisphenol A by Plant Tissues: Glucosylation by Cultured BY-2 Cells and Glucosylation/Translocation by Plants of Nicotiana tabacum''': Nobuyoshi Nakajima1,4, Yukiko Ohshima2, Shigeko Serizawa2, Tomoko Kouda2, John S. Edmonds2, Fujio Shiraishi2, Mitsuko Aono3, Akihiro Kubo3, Masanori Tamaoki1, Hikaru Saji3 and Masatoshi Morita2.
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<br>[http://pcp.oxfordjournals.org/cgi/content/full/43/9/1036 Link]<br>
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<li>'''Purification of Cytochrome P450 and Ferredoxin, Involved in Bisphenonol A Degradation, from Sphingomonas sp. Strain AO1''': Miho Sasaki,Ayako Akahira, Ko-ichi Oshiman, Tetsuaki Tsuchido, and Yoshinobu Matsumura.
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<br> [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1317416 Link] <br>
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<li>'''Biodegradation of bisphenol A by cells and cell lysate from Sphingomonas sp. strain AO1''': Miho Sasaki1, Jun-ichi Maki1, Ko-ichi Oshiman3, Yoshinobu Matsumura1, 2  and Tetsuaki Tsuchido1, 2.
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<br>[http://www.springerlink.com/content/q7864l02734wg32m/fulltext.pdf Link] <br>
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<li>'''Bisphenol A Degradation by Bacteria Isolated from River Water''': J.-H. Kang and F. Kondo.
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<br>[http://www.springerlink.com/content/ge1mec9289r4cw3w/fulltext.pdf Link] <br>
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===Plant Info===
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<li>'''The Basic Helix–Loop–Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity''':
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Marc A. Heim, Marc Jakoby, Martin Werber, Cathie Martin, Bernd Weisshaar, and Paul C. Bailey
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[http://mbe.oxfordjournals.org/cgi/content/full/20/5/735 Link]
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===Cell Free===
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<li>'''Biosensor immunoassays for the detection of bisphenol A''': Gerardo R. Marchesinia, b, c, , , Eline Meulenberga, Willem Haasnootb and Hubertus Irthc
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<br>[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TF4-4D04TNM-1&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=4aab2bf3161d728c5c3bd69a3c418800 Link]
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<li>'''Basis of a High-Throughput Method for Nuclear Receptor Ligands''': Tomohiko Kanayama, Satoru Mamiya, Tsutomu Nishihara and Jun-ichi Nishikawa J. Biochem. 133, 791–797 (2003)<br>[http://jb.oxfordjournals.org/cgi/reprint/133/6/791?maxtoshow=&HITS=10&hits=10&RESULTFORMAT=1&author1=kanayama&author2=nishikawa&andorexacttitle=and&andorexacttitleabs=and&andorexactfulltext=and&searchid=1&FIRSTINDEX=0&sortspec=relevance&resourcetype=HWCIT Link]<br>
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===Prokaryotic Expression===
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<li>'''High level expression of full-length estrogen receptor in
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Escherichia coli is facilitated by the uncoupler of oxidative
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phosphorylation, CCCP''':Cheng Cheng Zhang, Kevin A. Glenn 1, Martin A. Kuntz, David J. Shapiro. Journal of Steroid Biochemistry & Molecular Biology 74 (2000) 169–178 <br>
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T8X-4233BF2-2&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=d1f19b9d53d5416246025fdc1aeba8c0 Link]<br>
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===Other Info===
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<li>'''Natural Animal Coloration Can Be Determined by a Nonfluorescent Green Flourescent Protein Homolog''': Lukyanov K., Fradkov A., Gurskaya N., Matz M., Labas Y., Savitsky A., Markelov M., Zaraisky A., Zhao X., Fang Y., Tan W., and Lukyanov S.
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[http://www.jbc.org/cgi/content/abstract/275/34/25879 Link]
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<li>'''An impedimetric immunosensor for the label-free detection of bisphenol A''':Md. Aminur Rahmana, Muhammad J.A. Shiddikya, Jang-Su Park and Yoon-Bo Shim,
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[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFC-4M3J0PC-4&_user=1067472&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000051251&_version=1&_urlVersion=0&_userid=1067472&md5=88089d3f9567b0671e2606a2820fc0c6 Link]
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<li>'''Simultaneous Determination of 4-Nonylphenol and Bisphenol A in Sewage Sludge''':Roland J. W. Meesters and Horst Fr. Schröder*
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[http://pubs.acs.org/cgi-bin/article.cgi/ancham/2002/74/i14/html/ac011258q.html link]
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==Other documents==
==Other documents==

Revision as of 21:32, 29 October 2008

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Click a Button to see info on that Project!
Plantbutton.jpgPlasticbutton.jpgButanerd_button.jpg

WELCOME

Well here you are on our project page. We have 3 projects. Our major project is the Plastic project (Bisphenol Eh?), with two supplementary projects focused on an iGEM plant binary vector (Plant Project) and butanol synthesis (Butanerds). Enjoy.

Other documents

Sequencing Results

Click here for sequences and chromatograms.