Team:Warsaw/Calendar-Main/30 September 2008

From 2008.igem.org

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<h4>Michał K.</h4>
<h4>Michał K.</h4>
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<ol>
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<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>pACYC177+OmpA_omega_deltaA_alpha</a> with BamHI and PstI (BamHI buffer)<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/30_September_2008#fig1">Fig. 1</a><a name="fig1">. </li>
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<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>pACYC177+OmpA_omega_deltaA_alpha</a> with BamHI and PstI (BamHI buffer)<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/30_September_2008#fig1">Fig. 1</a>. </li>
<li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmids.</li>
<li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">Dephosphorylation</a> (CIAP) of plasmids.</li>
<li>Gel elctrophoresis and <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band: ??????. </li>  
<li>Gel elctrophoresis and <a href="https://2008.igem.org/Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper band: ??????. </li>  
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<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of omega_link fragment (PCR from previous day) with EcoRI and BcuI (BamHI buffer)<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/30_September_2008#fig2">Fig. 2</a><a name="fig2"> </li>
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<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of omega_link fragment (PCR from previous day) with EcoRI and BcuI (BamHI buffer)<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/30_September_2008#fig2">Fig. 2</a></li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of OmpA_omega </a> with BglII and PstI (Orange buffer). </li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of OmpA_omega </a> with BglII and PstI (Orange buffer). </li>

Revision as of 21:25, 26 October 2008

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Mutagenesis of protein A

Paweł

Results of sequencing: unfortunately all sequences were wild-type.

Preparation of vectors for Biobricks

Michał K., Piotr

  1. Isolation of pSB2K3 and BBa_I739204 (pACYC177 converted into BioBrick vector) plasmids.
  2. Digest of isolated plasmids with EcoRI and BcuI (BamHI buffer). Dephosphorylation (CIAP) of plasmids.
  3. Inoculation of bacteria received from iGEM HQs, carrying pSB2K3 and BBa_I739204 (pACYC177 converted into BioBrick vector) plasmids.

Preparation of BioBricks

Michał K.

  1. Digest of pACYC177+OmpA_omega_deltaA_alpha with BamHI and PstI (BamHI buffer)Fig. 1.
  2. Dephosphorylation (CIAP) of plasmids.
  3. Gel elctrophoresis and gel-out of proper band: ??????.
  4. Digest of omega_link fragment (PCR from previous day) with EcoRI and BcuI (BamHI buffer)Fig. 2
  5. Digest of OmpA_omega with BglII and PstI (Orange buffer).
  6. Clean-up of above digest reactions.
  7. Overnight digest of purified pLac_OmpA_omega fragment (from previous day) with EcoRI (EcoRI buffer). DNA ends blunting with Klenow fragment.

Piotr

  1. E. coli TOP10 transformation with overnight ligations pSB1A3 + Z(BBa_K103004) and pSB1A3 + OmpA_link).
  2. Plating on LB + ampicillin.
Fig. 1. Control EcoRI/BcuI digests of isolated plasmids
1. Marker
2-3. digested plasmids BBa_I739204
4. digested plasmid psB2K3 Fig. 2. Control BamHI/PstI digests of isolated plasmids
1. Marker
2. digested plasmid pACYC_OmpA_omega_deltaA_alpha