Team:Paris/Modeling/Molecular Reactions

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{{Paris/Header|Molecular Reactions}}

We show here the elementary reactions from wich we started. They intend to be "exhaustives" in the sense that every steps of the [[Team:Paris/Modeling/Protocol_Of_Characterization|system]] is described. Each of those reactions has to be "mathematically interpreted", in a [[Team:Paris/Modeling/FromMolReactToNLOde|model]] which accounts for the important phenomenons, and, in the same time, which allows us to find [[Team:Paris/Modeling/Protocol_Of_Characterisation|experimentally]] every involved parameters.

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'''The system we are studying is the "'''<span style="color:#0000FF;">Core System</span> '''with three genes of interest"''' that we can represent in the <span style="color:#0000FF;">scheme</span> in the precisions just below (with all alternatives ''pFlhDC'' or ''pTet'' and ''TetR'' or ''envZ'' or ''OmpR<sup>*</sup>'')

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{{Paris/Toggle|precisions|Team:Paris/Modeling/More_Mol_Reac_System}}
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{| border="1" width="100%" style="text-align: center"
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| width="75%" | '''Complexation Reactions''' <br>
The double triangle ('''><''') is a symbol for complexations : <br>
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>

<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/3/3a/Complexation_Reactions.pdf"></iframe></html>

| width="25%" | '''On the Example :''' <br>
<small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small><br>
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* ''FlhDC'' and ''FliA'' bind to ''pFliL'' : <br>
[[Image:DCiLcompl.jpg]]

[[Image:AiLcompl.jpg]]

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| width="75%" | '''Production Reactions''' <br>
The double triangle ('''><''') is a symbol for complexations : <br>
[[Image:compl.jpg|110px]] means ''n<sub>1</sub>'' molecules of ''FlhDC'' complexed with a ''pFliA'' promoter<br><br>

<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/e/ef/Production_Reactions.pdf"></iframe></html>

| width="25%" | '''On the Example :''' <br>
<small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small> <br>
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* ''FlhDC><pFliL'' and ''FliA><pFliL'' causes "production" of ''FP1'' : <br>
<br> <br>
[[Image:bFP1.jpg]]

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| width="75%" | '''Degradation/Dilution Reactions''' <br><br>

<html><iframe height="300" width="600" src="https://static.igem.org/mediawiki/2008/f/f7/Degradation_Dilution.pdf"></iframe></html>

| width="25%" | '''On the Example :''' <br>
<small> How given amounts of ''FlhDC'' and ''FliA'' would produce ''FP1'' ? </small><br>
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* ''FP1'' disappears because of its degradation and dilution : <br>
[[Image:dFP1.jpg]]

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<div style="text-align: right">For complete PDF with all Reactions and Numbered References : [[https://static.igem.org/mediawiki/2008/6/61/Equa_Core_System.pdf|complete list of reactions/equations]] </div>

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