Team:MIT/Parts

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Latest revision as of 04:06, 30 October 2008

Home	The Team	The Project	Experiments	Parts Submitted to the Registry	Results	Notebook

Parts Submitted to the Registry

p1025

This sequence codes for a short peptide, found to competitively inhibit binding of S.mutans to the tooth surface ([http://www.ncbi.nlm.nih.gov/pubmed/9920267?dopt=Abstract|Kelly CG et al.; Nature Biotechnol. 1999]). S.mutans takes in sugars and secretes lactic acid, causing dental cavities, so introduction of this peptide into the mouth prevents colonies. This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128003 BBa_K128003]

pLEM415 plasmid with Biobrick inserts

This is the pLEM415 plasmid, an E.coli shuttle vector and is able to transform Lactobacillus delbruckii subsp. bulgaricus and Lactobacillus delbruckii subsp. lactis.

This piece is under construction
Biobrick Number: [http://partsregistry.org/Part:BBa_K128007 BBa_K128007]

pJK650 plasmid

This is the pJK650 plasmid, which has the ability to transform Lactobacillus delbruckii subsp. bulgaricus and Lactobacillus delbruckii subsp. lactis.

This piece is under construction
Biobrick Number: [http://partsregistry.org/Part:BBa_K128008 BBa_K128008]

GFP

Although there are multiple GFP parts in the registry already, this part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

L.bulgaricus signal

This is a short signal sequence recognized as a secretion tag by Lactobacillus strains. It was isolated from the 5' end of the prtB gene in Lactobacillus bulgaricus, which codes for a lactose digesting protein that is bound to the surface ([http://www.ncbi.nlm.nih.gov/pubmed/12788739?dopt=Abstract| Germond JE et al.; Appl Environ Microbiol. 2003]). This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128004 BBa_K128004]

FLAG tag

This is the well-known FLAG tag for use in antibody binding assays. This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick Number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128000 BBa_K128000]

HA tag

This is the well-known HA tag for use in antibody binding assays. This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128001 BBa_K128001]

His tag

This codes for six Histidine residues to allow for His column protein purification. It will work best if put at either the N or C terminus of your protein construct. This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128005 BBa_K128005]

Tev Cleavage Site

This codes for the seven amino acid sequences that is recognized by the Tobacco Etch Virus protease. The amino acid sequenced used is:

Glu-Asn-Leu-Tyr-Phe-Gln-Gly.

The TEV protease cuts between Gln and Gly. This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.

Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128002 BBa_K128002]

L. bulgaricus Native Promoter

This is the native LacS Promoter of the bacteria Lactobacillus delbruckii subsp. bulgaricus. It is a LacS promoter taken from genomic DNA. It should include a ribosome binding site also, so no additional RBS is needed. This promoter should be used in experiments that aim to alter the gene function of L. bulgaricus. It is a LacS promoter so should be able to be regulated.

Biobrick Number: [http://partsregistry.org/Part:BBa_K128006 BBa_K128006]

Home	The Team	The Project	Experiments	Parts Submitted to the Registry	Modeling	Notebook

@@ Line 1: / Line 1: @@
 <!--- The Mission, Experiments --->
-{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+{| style="color:#1b2c8a;background-color:#CCCCCC;" cellpadding="3" cellspacing="1" border="1" bordercolor="#green" width="62%" align="center"
 !align="center"|[[Team:MIT|Home]]
 !align="center"|[[Team:MIT/Team|The Team]]
 !align="center"|[[Team:MIT/Project|The Project]]
+!align="center"|[[Team:MIT/Experiments|Experiments]]
 !align="center"|[[Team:MIT/Parts|Parts Submitted to the Registry]]
-!align="center"|[[Team:MIT/Modeling|Modeling]]
+!align="center"|[[Team:MIT/Modeling|Results]]
 !align="center"|[[Team:MIT/Notebook|Notebook]]
 |}
-<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
+<!--- The Mission, Experiments --->
-<html>
+== Parts Submitted to the Registry ==
-<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #000; background-color: #fe2b33;">
-<div id="template" style="text-align: center; font-weight: bold; font-size: large; color: #f6f6f6; padding: 5px;">
-This is a template page. READ THESE INSTRUCTIONS.
-</div>
-<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; color: #f6f6f6; padding: 5px;">
-You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2008.igem.org/Help:Template/Examples">HERE</a>.
-</div>
-<div id="warning" style="text-align: center; font-weight: bold; font-size: small; color: #f6f6f6; padding: 5px;">
-You <strong>MUST</strong> have a team description page, a project abstract, a complete project description, and a lab notebook.  PLEASE keep all of your pages within your Team:Example namespace.
-</div>
-</div>
-</html>
-<!-- *** End of the alert box *** -->
+==== p1025 ====
+This sequence codes for a short peptide, found to competitively inhibit binding of S.mutans to the tooth surface ([http://www.ncbi.nlm.nih.gov/pubmed/9920267?dopt=Abstract|Kelly CG et al.; Nature Biotechnol. 1999]). S.mutans takes in sugars and secretes lactic acid, causing dental cavities, so introduction of this peptide into the mouth prevents colonies.
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128003 BBa_K128003]
-{|align="justify"
+====pLEM415 plasmid with Biobrick inserts ====
-|You can write a background of your team here.  Give us a background of your team, the members, etc.  Or tell us more about something of your choosing.
+This is the pLEM415 plasmid, an E.coli shuttle vector and is able to transform ''Lactobacillus delbruckii'' subsp. ''bulgaricus'' and ''Lactobacillus delbruckii'' subsp. ''lactis''.
-|[[Image:Example_logo.png|200px|right|frame]]
+*This piece is under construction
-|-
+*Biobrick Number: [http://partsregistry.org/Part:BBa_K128007 BBa_K128007]
-|
-''Tell us more about your project.  Give us background.  Use this is the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
-|[[Image:Team.png|right|frame|Your team picture]]
-|-
-|
-|align="center"|[[Team:MIT | Team Example 2]]
-|}
-<!--- The Mission, Experiments --->
-{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="62%" align="center"
+====pJK650 plasmid ====
+This is the pJK650 plasmid, which has the ability to transform ''Lactobacillus delbruckii'' subsp. ''bulgaricus'' and ''Lactobacillus delbruckii'' subsp. ''lactis''.
+*This piece is under construction
+*Biobrick Number: [http://partsregistry.org/Part:BBa_K128008 BBa_K128008]
+==== GFP ====
+Although there are multiple GFP parts in the registry already, this part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+==== L.bulgaricus signal ====
+This is a short signal sequence recognized as a secretion tag by Lactobacillus strains. It was isolated from the 5' end of the prtB gene in Lactobacillus bulgaricus, which codes for a lactose digesting protein that is bound to the surface ([http://www.ncbi.nlm.nih.gov/pubmed/12788739?dopt=Abstract| Germond JE et al.; Appl Environ Microbiol. 2003]).
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128004 BBa_K128004]
+==== FLAG tag ====
+This is the well-known FLAG tag for use in antibody binding assays.
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick Number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128000 BBa_K128000]
+==== HA tag ====
+This is the well-known HA tag for use in antibody binding assays.
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128001 BBa_K128001]
+==== His tag ====
+This codes for six Histidine residues to allow for His column protein purification. It will work best if put at either the N or C terminus of your protein construct.
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128005 BBa_K128005]
+==== Tev Cleavage Site ====
+This codes for the seven amino acid sequences that is recognized by the Tobacco Etch Virus protease. The amino acid sequenced used is:
+*Glu-Asn-Leu-Tyr-Phe-Gln-Gly.
+The TEV protease cuts between Gln and Gly.
+This part uses the modified Silver BioBrick prefix and suffix to allow for protein construction.
+*Biobrick number: [http://partsregistry.org/wiki/index.php?title=Part:BBa_K128002 BBa_K128002]
+====L. bulgaricus Native Promoter ====
+This is the native LacS Promoter of the bacteria ''Lactobacillus delbruckii'' subsp. ''bulgaricus''. It is a LacS promoter taken from genomic DNA. It should include a ribosome binding site also, so no additional RBS is needed. This promoter should be used in experiments that aim to alter the gene function of ''L. bulgaricus''. It is a LacS promoter so should be able to be regulated.
+*Biobrick Number: [http://partsregistry.org/Part:BBa_K128006 BBa_K128006]
+{| style="color:#1b2c8a;background-color:#CCCCCC;" cellpadding="3" cellspacing="1" border="1" bordercolor="#green" width="62%" align="center"
 !align="center"|[[Team:MIT|Home]]
 !align="center"|[[Team:MIT/Team|The Team]]
 !align="center"|[[Team:MIT/Project|The Project]]
+!align="center"|[[Team:MIT/Experiments|Experiments]]
 !align="center"|[[Team:MIT/Parts|Parts Submitted to the Registry]]
 !align="center"|[[Team:MIT/Modeling|Modeling]]
 !align="center"|[[Team:MIT/Notebook|Notebook]]
 |}
-(''Or you can choose different headings.  But you must have a team page, a project page, and a notebook page.'')
-===Note===
-If you choose to include a '''Parts Submitted to the Registry''' page, please list your parts here.  This is not necessary but it may be a nice list to keep track of.