Team:Tsinghua/Project2

From 2008.igem.org

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<!--- The Mission, Experiments --->
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[[image:331.jpeg|center|]]
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="100%" align="center"
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!align="center"|[[Team:Tsinghua|HOME]]
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!align="center"|[[Team:Tsinghua/Team|Team]]
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!align="center"|[[Team:Tsinghua/Project|Project 1]]
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!align="center"|[[Team:Tsinghua/Project2|Project 2]]
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!align="center"|[[Team:Tsinghua/Parts|Parts]]
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!align="center"|[[Team:Tsinghua/Modelling|Modelling]]
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!align="center"|[[Team:Tsinghua/Notebook|Notebook]]
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!align="center"|[[Team:Tsinghua/Doodle|Doodle Board]]
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|}
== PHA Project ==
== PHA Project ==
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&nbsp;&nbsp;&nbsp;[[Project Description ]]
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&nbsp;&nbsp;&nbsp;[[Designed Charts]]
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DNA Template Resources:
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&nbsp;&nbsp;&nbsp;[[Molecular Cloning]]
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PhbCAB: PBHR68 Plasmid
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Lac I: PET28a
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CRE:
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PpPhaP: Ralstonia eutropha H16 genome
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PrPhaR: Ralstonia eutropha H16 genome
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SRRz:
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EGFP:
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Primers:
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(1) SRRz Primers
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IGEM-ZouYLP-SRRZ-NcoI-for
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5- ATCCATGGATGAAGATGCCAGAAAAACATGACCTGTTG-3
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IGEM-ZouYLP-SRRZ-rev-in
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5 - ACCCCGCCGAAGCGGGGTTTTTTTTTCTACTATCTGCACTGCTCATTAATA-3
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IGEM-ZouYLP-SRRZ-BamHI-rev-out
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5 -TATGGATCCAAAAAAAAACCCCGCCGAAGCGGGGTT-3
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(2)
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IGEM-ZouYLP-PP-PhaP-NotI-for
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5- TATGCGGCCGCTGTTTGTGCATTGCACAAAATCCA-3
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IGEM-ZouYLP-PP-PhaP-HindIII-rev
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5- CACCATGTCGACTTTCTCCTCTTTAAGCTTTCAGGCAGCCGTCGTCTTCTTTG-3
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IGEM-ZouYLP-LacILVA-HindIII-for
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5-TGCCTGAAAGCTTAAAGAGGAGAAAGTCGACATGGTGAATGTGAAACCAGTAAC-3
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IGEM-ZouYLP-LacILVA-rev-in
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5- AGCTACTAAAGCGTAGTTTTCGTCGTTTGCAGCCTGCCCGCTTTCCAGTCGGGAAACCT-3
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IGEM-ZouYLP-LacILVA-rev-PstI-out
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5- ATTGGACATGCGCGCTTTCTCCTCTTTCTGCAGTTATTAAGCTACTAAAGCGTAGTTTT-3
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IGEM-ZouYLP-CreT7ter—PstI-for
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5- TGCAGAAAGAGGAGAAAGCGCGCATGTCCAATTTACTGACCGTACACCAAAATT-3
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IGEM-ZouYLP-CreT7ter-rev-in
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5-AGCGGGGTTTTTTTTTCTACTAATCGCCATCTTCCAGCAG-3
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IGEM-ZouYLP-CreT7ter-EcoRI-rev-out
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5-ATGAATTCGAGCTCGAAAAAAAAACCCCGCCGAAGCGGGGTTTTTTTTTCTACTAAT-3
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(3)
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IGEM-ZouYLP-PR-PhaR-NotI-for
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5-ATGCGGCCGCAGTGCCTTGTTGGGCATAGAATCAGGGCAGCGGCGCAGC-3
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IGEM-ZouYLP-PR-PhaR-NdeI-rev
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5-ACGAAGTTATCATATGTTATTACTTCTTGTCCGGCTGGTTGAACGGGAACGTCCCGAAC-3
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IGEM-ZouYLP-LRLacILP-for-in
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5-TGCTATACGAAGTTATAAAGAGGAGAAACTCGAGATGGTGAATGTGAAACCAGTAACGT-3
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IGEM-ZouYLP-LRLacILP-NdeI-for-out
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5-ACAAGAAGTAATAACATATGATAACTTCGTATAATGTATGCTATACGAAGTTATAAAGA-3
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IGEM-ZouYLP-LRLacILP-rev-in
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5-TACGAAGTTATCTACTGCCCGCTTTCCAGTCGGGAAACCT-3
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IGEM-ZouYLP-LRLacILP-KpnI-rev-out
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5-ATGGTACCATAACTTCGTATAGCATACATTATACGAAGTTATCTACTGCCCGCTT-3
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(4) EGFP
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IGEMZouYLP-EGFP-for-KoZg-for
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5-ccatgggcagcaagggcgaggagctgttc-3
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IGEMZouYLP-EGFP-rev-in
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5-AAAAAAAAACCCCGCCGAAGCGGGGTTTTTTTTTCTATCACTTGTACAGCTCGTC-3
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IGEMZouYLP-EGFP-rev-out
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5-TTTTC GAGCTC GAATTC GGATCCAAAAAAAAACCCCGCCGAA-3
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IGEMZouYLP-EGFP-KoZg-rev
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5-TTTTCGAGCTCGAATTCGG-3
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Designed Molecule
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[[Image:SRRz-Duet.jpg]]
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[[Image:EGFP-Duet.jpg]]
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Plasmid constructs:
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1  pUCPhbCAB
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2  pACYC(lacI+) DuetSRRz
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3  pACYC(lacI+) DuetEGFP
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4  pACYC(lacI-) DuetSRRz
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5  pACYC(lacI-) DuetEGFP
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6  pACYC(LacI-)DuetSRRzPpPhaPLacILVACret7terPrPhaRLoxPLacILoxP
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7  pACYC(LacI-)DuetEGFPPpPhaPLacILVACret7terPrPhaRLoxPLacILoxP
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Cloning Strategy:
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(1) Fragment Preparation:
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SRRz: PCR with primer SRRZ-NcoI-for and SRRZ-rev-in;
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    Purify the product and run PCR with primer SRRZ-NcoI-for and primer SRRZ-BamHI-rev-out;
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EGFP: PCR with primer EGFP-for-KoZg-for and EGFP-rev-in;
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    Purify the product and run PCR with primer EGFP-for-KoZg-for and primer EGFP-rev-out;
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PpPhaP: PCR with primer PP-PhaP-NotI-for and PP-PhaP-HindIII-rev;
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LacI(LVA): PCR with primer LacILVA-HindIII-for and LacILVA-rev-in;
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    Purify the product and run PCR with primer LacILVA-HindIII-for and primer LacILVA-rev-PstI-out;
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CRE(T7ter): PCR with primer CreT7ter—PstI-for and CreT7ter-rev-in
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&nbsp;&nbsp;&nbsp;[[WetLab Results]]
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    Purify the product and run PCR with primer CreT7ter—PstI-for and  CreT7ter-EcoRI-rev-out;
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PrPhaR: PCR with primer PR-PhaR-NotI-for and PR-PhaR-NdeI-rev;
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&nbsp;&nbsp;&nbsp;[[PHA Project Modeling]]
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LoxPLacILoxP: PCR with primer LRLacILP-for-in and LRLacILP-rev-in
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&nbsp;&nbsp;&nbsp;[[Reference]]
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    Purify the product and run PCR with primer LRLacILP-NdeI-for-out and primer LRLacILP-KpnI-rev-out.
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(2) Fragment Fusion
 
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Fuse LacI(LVA) and CRE(T7ter) together and amplify with the primer LacILVA-HindIII-for and CreT7ter-EcoRI-rev-out;
 
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Fuse PrPhaR and LoxPLacILoxP together and amplify with the Primer PR-PhaR-NotI-for and LRLacILP-KpnI-rev-out.
 
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We’ve tried to fuse more by PCR, but failed.
 
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(3) Vector preparation
 
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We choose pACYCDuet-1 as our second vector while PhbCAB operon is cloned into PUC18.
 
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Since lacI is one of the elements we also used in our own system, we knocked out the lacI coding region in pACYCDuet-1 successfully.
 
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(4) Cut and Insert
 
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The restriction enzymes are chosen as following:
 
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Fragment Enzyme A Enzyme B
 
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SRRz/EGFP NcoI BamHI
 
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PpPhaP NotI HindIII
 
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LacI(LVA)Cre(T7ter) HindIII SacI
 
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PrPhaRLoxPLacILoxP NotI KpnI
 
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== Reference ==
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{| style="color:#1b2c8a;background-color:#0c6;" cellpadding="3" cellspacing="1" border="1" bordercolor="#fff" width="100%" align="center"
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1  
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!align="center"|[[Team:Tsinghua|HOME]]
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A sensitive, viable-colony staining method using Nile red
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!align="center"|[[Team:Tsinghua/Team|Team]]
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for direct screening of bacteria that accumulate polyhydroxyalkanoic
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!align="center"|[[Team:Tsinghua/Project|Project 1]]
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acids and other lipid storage compounds
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!align="center"|[[Team:Tsinghua/Project2|Project 2]]
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!align="center"|[[Team:Tsinghua/Parts|Parts]]
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!align="center"|[[Team:Tsinghua/Modelling|Modelling]]
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!align="center"|[[Team:Tsinghua/Notebook|Notebook]]
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!align="center"|[[Team:Tsinghua/Doodle|Doodle Board]]
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|}
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<!--- The Mission, Experiments --->
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[[image:06.jpeg|center|]]

Latest revision as of 04:30, 30 October 2008

331.jpeg
HOME Team Project 1 Project 2 Parts Modelling Notebook Doodle Board

PHA Project

   Project Description

   Designed Charts

   Molecular Cloning

   WetLab Results

   PHA Project Modeling

   Reference


HOME Team Project 1 Project 2 Parts Modelling Notebook Doodle Board
06.jpeg
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