Template:Team:UC Berkeley/Notebook/DV sequencing

From 2008.igem.org

(Difference between revisions)

Latest revision as of 18:47, 11 July 2008

Read	Date	Plasmid	Clone #	Oligo	Result	File
DV4	6/19/08	Bca1256-K112706	Clone #1	ca998	Bad read	DV4
DV5	6/19/08	Bca1256-K112707	Clone #1	ca998	Point Mutation	DJV002
DV6	6/19/08	Bca1256-K112708	Clone #1	ca998	Perfect Read!	DJV003
DV8	6/19/08	Bca1256-K112710	Clone #1	ca998	Perfect Read!	DJV004
DV11	6/19/08	Bca1256-K112704	Clone #1	ca998	Insertion	DJV005
DV13	6/19/08	Bca1256-K112705	Clone #1	ca998	Perfect Read	DJV006
DV21	6/19/08	Bca1256-K112709	Clone #1	ca998	Perfect Read	DJV007
DV009/010	6/19/08	Bca1256-K112703	Clone #1	ca998	Bad read	DJV008
ig10	6/22/08	Bca1256-K112705	Clone #2	ca998	Bad read	ig10
ig11	6/22/08	Bca1256-K112706	Clone #2	ca998	Perfect read	ig11
ig12	6/22/08	Bca1256-K112707	Clone #2	ca998	Bad read	ig12
ig13	6/22/08	Bca1256-K112709	Clone #2	ca998	Bad read	ig13
ig14	6/22/08	Bca1256-K112711	Clone #1	ca998	Close, shows correct sequence until end- attempt reverse read	ig14
ig15	6/22/08	Bca1256-K112701	Clone #2	ca998	Several mutations	ig15
ig14	6/24/08	Bca1256-K112711	Clone #1	g00101	Shows good sequence from end	DJV015
DJV016	6/25/08	Bca1256-K112701	Clone #2	ca998	Perfect read, eliminating EcoRI restr. sites	DJV016
DJV017	6/25/08	Bca1256-K112701	Clone #3	ca998	Perfect read, homology w/ DJV016	DJV017
DJV018	6/25/08	Bca1256-K112704	Clone #3	ca998	Perfect read	DJV018
DJV019	6/25/08	Bca1256-K112704	Clone #4	ca998	Perfect read	DJV019
DJV020	6/25/08	Bca1256-K112707	Clone #3	ca998	Good read for 900bp, then a couple insertions/dels	DJV020
DJV021	6/25/08	Bca1256-K112707	Clone #4	ca998	att-site Dimerization prevents a complete read	DJV021
DJV020alfwd	6/26/08	Bca1256-K112707	Clone #3	al027	Perfect read when combined w/ ca998 and g00101	DJV022
DJV020	6/26/08	Bca1256-K112707	Clone #3	g00101	See above	DJV023
DJV024	6/27/08	k112703-1	Clone #	ca998	Perfect	DJV024
DJV025	6/27/08	k112703-2	Clone #	ca998	Perfect	DJV025
DJV026	6/27/08	k112703-3	Clone #	ca998	Perfect	DJV026
DJV027	Date	Plasmid	Clone #1	ca998	Result	DJV027
DJV028	Date	Plasmid	Clone #2	ca998	Result	DJV028
DJV029	Date	Plasmid	Clone #3	ca998	Result	DJV029
DJV030	Date	Plasmid	Clone #	Oligo	Result	DJV030
DJV031	Date	Plasmid	Clone #	Oligo	Result	DJV031
DJV032	Date	Plasmid	Clone #	Oligo	Result	DJV032
DJV033	Date	Plasmid	Clone #	Oligo	Result	DJV033
DJV034	Date	Plasmid	Clone #	Oligo	Result	DJV034
DJV035	Date	Plasmid	Clone #	Oligo	Result	DJV035
DJV036	Date	Plasmid	Clone #	Oligo	Result	DJV036
DJV037	Date	Plasmid	Clone #	Oligo	Result	DJV037
DJV038	Date	Plasmid	Clone #	Oligo	Result	DJV038
DJV039	Date	Plasmid	Clone #	Oligo	Result	DJV039
DJV040	Date	Plasmid	Clone #	Oligo	Result	DJV040
DJV041	Date	Plasmid	Clone #	Oligo	Result	DJV041

@@ Line 27: / Line 27: @@
 |	ig13	||	6/22/08	||	Bca1256-K112709	||	Clone #2||	ca998	||	Bad read	||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV012 | ig13]]
 |-
-|	ig14	||	6/22/08	||	Bca1256-K112711	||	Clone #1	||	ca998	||	Close, shows correct sequence until end- attempt reverse read	||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV013 | DJV013]]
+|	ig14	||	6/22/08	||	Bca1256-K112711	||	Clone #1	||	ca998	||	Close, shows correct sequence until end- attempt reverse read	||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV013 | ig14]]
 |-
-|	ig15	||	6/22/08	||	Bca1256-K112701	||	Clone #2	||	ca998	||	Several mutations	||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV014 | DJV014]]
+|	ig15	||	6/22/08	||	Bca1256-K112701	||	Clone #2	||	ca998	||	Several mutations	||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV014 | ig15]]
 |-
 |	ig14	||	6/24/08	||	Bca1256-K112711||	Clone #1	||	g00101||	Shows good sequence from end||	 [[Team:UC Berkeley/Notebook/DV_sequencingDJV/DJV015 | DJV015]]