Team:UC Berkeley Tools

From 2008.igem.org

(Difference between revisions)
Line 37: Line 37:
     <td width="68" bgcolor="#33FF66"><p class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Team"><img src="https://static.igem.org/mediawiki/2008/e/ec/TheTeam_icon.png" alt="The Team" width="64" height="64" /></a></p>
     <td width="68" bgcolor="#33FF66"><p class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Team"><img src="https://static.igem.org/mediawiki/2008/e/ec/TheTeam_icon.png" alt="The Team" width="64" height="64" /></a></p>
     <p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Team">The Team</a></p></td>
     <p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Team">The Team</a></p></td>
-
     <td width="78" bgcolor="#33FF66"><p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Project"><img src="https://static.igem.org/mediawiki/2008/3/3c/Project_icon.png" width="64" height="64" alt="Project" /></a></p>
+
     <td width="78" bgcolor="#CCFF66"><p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Project"><img src="https://static.igem.org/mediawiki/2008/3/3c/Project_icon.png" width="64" height="64" alt="Project" /></a></p>
     <p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Project">The Project</a></p></td>
     <p align="center" class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Project">The Project</a></p></td>
     <td width="72" bgcolor="#0099FF"><p class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Notebook"><img src="https://static.igem.org/mediawiki/2008/9/94/Notebook_icon.png" alt="Notebooks" width="64" height="64" /></a></p>
     <td width="72" bgcolor="#0099FF"><p class="style1"><a href="https://2008.igem.org/Team:UC_Berkeley_Tools/Notebook"><img src="https://static.igem.org/mediawiki/2008/9/94/Notebook_icon.png" alt="Notebooks" width="64" height="64" /></a></p>

Revision as of 04:24, 27 July 2008

DayShot SatherGate.jpg

Untitled Document

Home

Home

The Team

The Team

Project

The Project

Notebooks

Notebooks


Welcome to the 2008 UC Berkeley Tools Team wiki! If you feel you have navigated to the wrong place, here's a link that will bring you back to iGEM 2008's home page.


[http://biocad-server.eecs.berkeley.edu/wiki/index.php/Clotho_Development The Alpha release is here]! Or at least will soon be, as soon as it gets uploaded to the Biocad wiki. Be the first to try it out!

Contents

About the Team

HomerBioPic.jpg

Team: iGEM 2008 UC Berkeley Tools. a.k.a., UC Berkeley Dry Team (why'd we have to be the dry ones?)

Members: Nade Sritanyaratana, Matthew Johnson, Anne Van Devender

Supervisors: Doug Densmore, Chris Anderson

Unsatisfied? Want more? Come here!










The Project

The Campanile, UC Berkeley


Genomics has reached the stage at which the amount of DNA sequence information in existing databases is quite large. Synthetic biology now is using these databases to catalog sequences according to their functionality and therefore creating standard biological parts which can be used to create large systems.


As these databases grow, the need for integrated tools that perform complex operations, organize information, and automate regular processes is becoming increasingly obvious. The synthetic biology community could be better-served with the development of flexible tools which not only permit access and modification to that data but also allow one to perform meaningful manipulation and use of that information in an intelligent and efficient way. These tools need to be useful to biologists working in a laboratory environment while leveraging the experience of the larger CAD community.


This project develops a toolset called "Clotho" which provides a variety of design views and tools to aid biologists to modify existing synthetic biological systems as well as create new ones. These tools differ from current offerings in this area in that they not only provide the needed tools to manipulate designs in one complete system but also provide unique ways in which to visualize the design as well as a number of connections to both local and global part repositories.



Notebooks

Doug's Notebook

Anne's Notebook

Matthew's Notebook

Nade's Notebook

Contact Us

For any inquiries or comments, please prefix emails with [iGEM 2008 Cal Comp Team]. So, if the preferred subject of the email were "Clotho Question", then please subject the email as "[iGEM 2008 Cal Comp Team]Clotho Question". Thanks!


Nade Sritanyaratana: nadesri(at)berkeley(dot)edu

Matthew Johnson: matthewjohnson(at)berkeley(dot)edu

Questions or Comments: Shoutbox

Quick question? Comment? Message here: (Thanks!)





Links

UC Berkeley Wet Team 2008 Wiki

[http://biocad-server.eecs.berkeley.edu/wiki/index.php/BioCad The BioCad Wiki of Dr. Doug Densmore]

[http://synberc.org/iGEM/ucb/ SynBERC iGEM Page]

All Other Team Wikis

Great examples of iGEM Wikis, from 2007

Retrieved from "http://2008.igem.org/Team:UC_Berkeley_Tools"