Template:Team:UC Berkeley/Notebook/SC Asequencing

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|  SC50  ||  8/13/2008  ||  sca42-2 ||  Clone #2  || g00101 || short - partial perfect ||  [[sca42-2]]   
|  SC50  ||  8/13/2008  ||  sca42-2 ||  Clone #2  || g00101 || short - partial perfect ||  [[sca42-2]]   
|-
|-
-
|  SC51  ||   8/13/2008 || sca42-5 ??? || Clone #5 || g00101 || Perfect(but contains <FLAG!) || [[sca42-5]]
+
|  SC51  || 8/13/2008|| sca42-5 (maybe sca43-2)? || Clone #5 || g00101 || Perfect(but contains <FLAG!) || [[sca42-5]]
|-
|-
|  SC52  ||  8/13/2008  ||  sca43-4 ||  Clone #4  || g00101 || short - only b1006 present || [[sca43-4]]
|  SC52  ||  8/13/2008  ||  sca43-4 ||  Clone #4  || g00101 || short - only b1006 present || [[sca43-4]]
|-
|-
-
|  SC53  ||  Date    ||  sca42-5 ||  Clone #5  || g00101 ||   result || [[sca42-5]]  
+
|  SC53  ||  8/14/2008  ||  sca42-5 ||  Clone #5  || g00101 || mixed inserts || [[sca42-5 2nd try]]  
|-
|-
-
|  SC54  ||  Date  ||  sca43-2  ||  Clone #2  || g00101 ||   result || [[sca43-2]]  
+
|  SC54  ||  8/14/2008  ||  sca43-2  ||  Clone #2  || g00101 || perfect || [[sca43-2]]  
 +
|-
 +
|  SC55  ||  8/14/2008  ||  sca44 ||  Clone #1  || ca998  || perfect ||  [[sca44-1]] 
 +
|-
 +
|  SC56  ||  8/14/2008  || sca45 ||  Clone #1  || ca998 || perfect || [[sca45-1]]
 +
|-
 +
|  SC57  ||  8/14/2008  || sca46 ||  Clone #1  ||  ca998 || perfect || [[sca46-1]]
 +
|-
 +
|  SC58  ||  8/14/2008  ||  sca47 ||  Clone #1  ||  ca998 || perfect (2nd try) || [[sca47-1]]
 +
|-
 +
|  SC59  ||  8/15/2008  ||  sca42 ||  Clone #7  || g00101 || short, missing phoA || [[sca42-7]]
 +
|-
 +
|  SC60  ||  8/15/2008  ||  sca42 ||  Clone #8  || g00101 || short, perfect  || [[sca42-8]]
 +
|-
 +
|  SC61  ||  8/15/2008  || sca42 ||  Clone #12  || g00101 || short, perfect  || [[sca42-12]]
 +
|-
 +
|  Read  ||  Date  ||  Description ||  Clone #  ||  oligo ||    result ||  file 
 +
|-
 +
|  Read  ||  Date  ||  Description ||  Clone #  ||  oligo ||    result ||  file 
|-
|-
|  Read  ||  Date  ||  Description ||  Clone #  ||  oligo ||    result ||  file   
|  Read  ||  Date  ||  Description ||  Clone #  ||  oligo ||    result ||  file   

Latest revision as of 20:06, 16 August 2008

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Read Date sca # Clone # Oligo Result File
CC09 7/18/2008 SCA15(trial 1) Clone #1 ca998/g00101 Bad read SCA15
CC10 7/18/2008 SCA17(trial 1) Clone #2 ca998/g00101 Bad read SCA17
CC11 7/22/2008 SCA18(trial 1) Clone #4 ca998 Low signal SCA18
CC12 7/22/2008 SCA19(trial 1) Clone #1 ca998 Low signal SCA19
CC13 7/22/2008 SCA18(trial 1) Clone #4 ca998 Low signal SCA18-2
CC14 7/22/2008 SCA19(trial 1) Clone #1 ca998 Low signal SCA19-2
SC16 7/22/2008 SCA16 Clone #3 ca998 Bad--mixed inserts SCA16
SC17 7/22/2008 SCA20 Clone #5 ca998/G00101 Bad--mixed inserts SCA20
SC18 7/22/2008 SCA22-1 Clone #1 ca998 Perfect SCA22
SC19 7/22/2008 SCA23-3 Clone #3 ca998 Perfect SCA23
SC20 7/22/2008 SCA24-1 Clone #1 ca998 Perfect SCA24
SC21 7/22/2008 SCA25-1 Clone #1 ca998 Perfect SCA25
SC22 7/23/2008 sca3-2 (fr. SP) Clone #2 ca998 Did not work SCA3-SP2
SC23 7/24/2008 sca3-PR2 Clone #2 ca998 mixed inserts SCA3-PR2
SC24 7/24/2008 sca15-1 (trial 2) Clone #1 ca998/g00101 ca998 weird;g00101 good SCA15-1
SC25 7/30/2008 sca1 T Clone # ca998/g00101 2 pt mutations SC25
SC26 7/30/2008 sca2 T Clone # ca998 Bad Read SC26
SC27 7/30/2008 sca3 T Clone #1 ca998 Bad Read SC27
SC28 7/30/2008 sca4 T Clone # ca998 Perfect(missing EcoRI) SC28
SC29 7/30/2008 sca6 T Clone # ca998 Perfect SC29
SC30 7/30/2008 sca7 T Clone # ca998 Perfect SC30
SC31 7/30/2008 sca8 T Clone # ca998/g00101 Perfect SC31
SC32 7/30/2008 sca9 T Clone # ca998/g00101 random sequence SC32
SC33 7/30/2008 sca14 T Clone # ca998 Perfect SC33
CC15 7/29/2008 sca5 (pBca1256) Clone #1 ca998 Perfect SCA5-1
CC16 7/29/2008 sca5 (pBca1256) Clone #2 ca998 Perfect SCA5-2
CC17 7/29/2008 sca11 (pBca1256) Clone #1 ca998 Perfect SCA11-1
CC18 7/29/2008 sca11 (pBca1256) Clone #2 ca998 Perfect SCA11-2
CC19 8/1/2008 sca5 T Clone #2 ca998 Perfect. no Bam site SCA5 T2
CC20 8/1/2008 sca11 T Clone #1 ca998 Perfect SCA11 T1
CC21 (CC11) 8/3/2008 sca5 T {<HA!} Clone #2 G00101 Perfect sca5 T
CC22 (CC12) 8/3/2008 sca11 T {<HA>} Clone #1 G00101 Perfect sca11 T
SC42 8/4/2008 sca2-1 Clone #1 g00101(try) no part...wrong sca2-1
SC43 Date sca3-9 Clone #9 ca998(&RS) Bad Read file
SC44 8/5/2008 sca23-4 Clone #4 ca998 Perfect sca23-4
SC45 8//8/2008 Stock amplif. fimH 1 sample ca998 mixed inserts Amplif. fimH
SC46 Date fimH Clone # oligo result file
SC47 8/13/2008 sca40-1 Clone #1 g00101 Perfect sca40-1
SC48 8/13/2008 sca40-4 Clone #4 g00101 mixed inserts sca40-4
SC49 8/13/2008 sca41-4 Clone #4 g00101 Perfect sca41-4
SC50 8/13/2008 sca42-2 Clone #2 g00101 short - partial perfect sca42-2
SC51 8/13/2008 sca42-5 (maybe sca43-2)? Clone #5 g00101 Perfect(but contains <FLAG!) sca42-5
SC52 8/13/2008 sca43-4 Clone #4 g00101 short - only b1006 present sca43-4
SC53 8/14/2008 sca42-5 Clone #5 g00101 mixed inserts sca42-5 2nd try
SC54 8/14/2008 sca43-2 Clone #2 g00101 perfect sca43-2
SC55 8/14/2008 sca44 Clone #1 ca998 perfect sca44-1
SC56 8/14/2008 sca45 Clone #1 ca998 perfect sca45-1
SC57 8/14/2008 sca46 Clone #1 ca998 perfect sca46-1
SC58 8/14/2008 sca47 Clone #1 ca998 perfect (2nd try) sca47-1
SC59 8/15/2008 sca42 Clone #7 g00101 short, missing phoA sca42-7
SC60 8/15/2008 sca42 Clone #8 g00101 short, perfect sca42-8
SC61 8/15/2008 sca42 Clone #12 g00101 short, perfect sca42-12
Read Date Description Clone # oligo result file
Read Date Description Clone # oligo result file
Read Date Description Clone # oligo result file
Read Date Description Clone # oligo result file
Read Date Description Clone # oligo result file
Read Date Description Clone # oligo result file


Sherine Cheung
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