Team:Warsaw/Calendar-Main/7 July 2008

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<p>'''Preparation of constructs with OmpA protein fusions''' <br>
<p>'''Preparation of constructs with OmpA protein fusions''' <br>
-
1. Digestation of confirmed clones of pET15b+OmpA_alpha and pET15b+OmpA_omega with NdeI and BamHI<br>
+
1. Digestion of confirmed clones of pET15b+OmpA_alpha and pET15b+OmpA_omega with NdeI and BamHI<br>
-
2. Digestation of pACYC177 plasmid with NdeI and BamHI, dephosphorylation with CIAP<br>
+
2. Digestion of pACYC177 plasmid with NdeI and BamHI, dephosphorylation with CIAP<br>
3. Gel electrophoresis and digested plasmids and gel-out of proper bands <br>
3. Gel electrophoresis and digested plasmids and gel-out of proper bands <br>
4. Overnight ligation of pACYC177 and OmpA_alpha<br>
4. Overnight ligation of pACYC177 and OmpA_alpha<br>
5. Overnight ligation of pACYC177 and OmpA_omega
5. Overnight ligation of pACYC177 and OmpA_omega
</p>
</p>
 +
<p>'''Preparation of construct pKS with A protein''' <br>
 +
1. Gradient PCR:<br>
 +
template DNA pDRIVE-TAPtag - 1 µl<br>
 +
primer APNot - 2 µl<br>
 +
primer ALSac - 2µl<br>
 +
Pfu buffer with Mg2+ - 5 µl<br>
 +
10 mM dNTPs - 1 µl<br>
 +
Pfu Turbo polymerase - 0,5 µl<br>
 +
H2O - 38,5 µl<br>
 +
<br>
 +
Program:<br>
 +
1. 94&deg;C, 3 min<br>
 +
2. 94&deg;C, 30 sec<br>
 +
3. 62&deg;C, 45 sec<br>
 +
4. 72&deg;C, 45 sec<br>
 +
5. Repeat of elongation step 25X<br>
 +
6. 72&deg;C, 10 min<br>
 +
7. Hold at 4 &deg;C<br>
 +
<br>
 +
2. Gel electrophoresis of PCR product<br>
 +
3. Isolation of proper band (470bp) from the gel<br>
 +
4. Overnight digestion of isolated PCR product with NotI and SacI
-
 
+
</p>
-
 
+
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Preparation of constructs with OmpA protein fusions
1. Digestion of confirmed clones of pET15b+OmpA_alpha and pET15b+OmpA_omega with NdeI and BamHI
2. Digestion of pACYC177 plasmid with NdeI and BamHI, dephosphorylation with CIAP
3. Gel electrophoresis and digested plasmids and gel-out of proper bands
4. Overnight ligation of pACYC177 and OmpA_alpha
5. Overnight ligation of pACYC177 and OmpA_omega

Preparation of construct pKS with A protein
1. Gradient PCR:
template DNA pDRIVE-TAPtag - 1 µl
primer APNot - 2 µl
primer ALSac - 2µl
Pfu buffer with Mg2+ - 5 µl
10 mM dNTPs - 1 µl
Pfu Turbo polymerase - 0,5 µl
H2O - 38,5 µl

Program:
1. 94°C, 3 min
2. 94°C, 30 sec
3. 62°C, 45 sec
4. 72°C, 45 sec
5. Repeat of elongation step 25X
6. 72°C, 10 min
7. Hold at 4 °C

2. Gel electrophoresis of PCR product
3. Isolation of proper band (470bp) from the gel
4. Overnight digestion of isolated PCR product with NotI and SacI