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Team:Chiba/jk/γ/week 6
From 2008.igem.org
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== WEEK 6 == | == WEEK 6 == | ||
| + | |||
| + | |||
| + | == 21,September,2008 == | ||
== 22,September,2008 == | == 22,September,2008 == | ||
| Line 16: | Line 19: | ||
<table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
<tr> | <tr> | ||
| - | <td width="257" | + | <td width="257">DNA</td> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
<td>2</td> | <td>2</td> | ||
</tr> | </tr> | ||
| Line 97: | Line 96: | ||
<tr> | <tr> | ||
<td>Buffer 2</td> | <td>Buffer 2</td> | ||
| - | <td>4</td>-</td><td>-</td><td>-</td><td>-</td> | + | <td>4</td><td>-</td><td>-</td><td>-</td><td>-</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 119: | Line 118: | ||
<table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
<tr> | <tr> | ||
| - | <td width="257" | + | <td width="257">DNA</td> |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
<td>1</td> | <td>1</td> | ||
</tr> | </tr> | ||
| Line 136: | Line 131: | ||
<tr> | <tr> | ||
<td>TOTAL</td> | <td>TOTAL</td> | ||
| - | <td> | + | <td>6</td> |
</tr> | </tr> | ||
</table> | </table> | ||
| Line 204: | Line 199: | ||
<tr> | <tr> | ||
<td>Taq(DNA pol)</td> | <td>Taq(DNA pol)</td> | ||
| - | <td> | + | <td>0.2</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 213: | Line 208: | ||
<td>thermo pol Buffer</td> | <td>thermo pol Buffer</td> | ||
<td>3</td> | <td>3</td> | ||
| + | </tr> | ||
| + | <tr> | ||
<td>dH2O</td> | <td>dH2O</td> | ||
<td>19.8</td> | <td>19.8</td> | ||
| Line 224: | Line 221: | ||
<br>->95℃ 5min ->(95℃ 1min 50℃ 30sec 72℃ 1min)x25 ->72℃ 10min | <br>->95℃ 5min ->(95℃ 1min 50℃ 30sec 72℃ 1min)x25 ->72℃ 10min | ||
| - | |||
| - | |||
<br>Digestion Test | <br>Digestion Test | ||
<br>BBa_I6206 | <br>BBa_I6206 | ||
| Line 260: | Line 255: | ||
<br>->30min 37℃ | <br>->30min 37℃ | ||
<br>Gel cheack | <br>Gel cheack | ||
| - | <br> | + | <br>BBa_I6206(digestion product) |
| + | <br>BBa_I6101(digestion product) | ||
| + | <br>BBa_I6042(digestion product) | ||
| + | <br>BBa_I0462(digestion product) | ||
| + | <br>BBa_I0642(natural) | ||
<table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
<tr> | <tr> | ||
<td width="257">Sample No</td> | <td width="257">Sample No</td> | ||
| - | <td>each(digestion)</td><td>I0462</td> | + | <td>each(digestion)</td><td>I0462(natural)</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| Line 279: | Line 278: | ||
<tr> | <tr> | ||
<td>TOTAL</td> | <td>TOTAL</td> | ||
| - | <td>12</td> | + | <td>12</td><td>6</td> |
</tr> | </tr> | ||
</table> | </table> | ||
| + | <br>Digestion | ||
| + | <br>BBa_I0462 | ||
| + | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
| + | <tr> | ||
| + | <td width="257">DNA</td> | ||
| + | <td>25</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>XbaⅠ</td> | ||
| + | <td>1</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>PstⅠ</td> | ||
| + | <td>1</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Buffer 3</td> | ||
| + | <td>4</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>BSA</td> | ||
| + | <td>4</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>dH2O</td> | ||
| + | <td>5</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>TOTAL</td> | ||
| + | <td>40</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | <br>->3hour 37℃ | ||
| + | <br>->Zymo ->10μl | ||
| + | |||
| + | <br>Ligation | ||
| + | <br>Vector:BBa_I7100 | ||
| + | <br>Insert:BBa_R0062 | ||
| + | <br>Insert:BBa_I0462 | ||
| + | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
| + | <tr> | ||
| + | <td width="257">I7100</td> | ||
| + | <td>1.3</td><td>1.3</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>R0062</td> | ||
| + | <td>2</td><td>-</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>I0462</td> | ||
| + | <td>3.3</td><td>-</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Ligase</td> | ||
| + | <td>1</td><td>1</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Ligase Buffer</td> | ||
| + | <td>2</td><td>2</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>dH2O | ||
| + | <td>0.4</td><td>5</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>TOTAL</td> | ||
| + | <td>10</td><td>10</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | <br>->3hour 37℃ | ||
| + | <br>->Transformation | ||
| + | |||
| + | == 26,September,2008 == | ||
| + | |||
| + | <br>TIME DELAY TEST | ||
| + | |||
| + | <br>colony PCR | ||
| + | <br>Ligation product(26,September)x7 | ||
| + | <br>Vector:BBa_R0062 | ||
| + | <table width="250" border="4" cellpadding="0" cellspacing="0" bordercolor="#000000"> | ||
| + | <tr> | ||
| + | <td width="257">Sample No</td> | ||
| + | <td>each</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>culture</td> | ||
| + | <td>1</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Fwd primer</td> | ||
| + | <td>1.5</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Rev primer</td> | ||
| + | <td>1.5</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Taq(DNA pol)</td> | ||
| + | <td>0.2</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>dNTPmix</td> | ||
| + | <td>3</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>thermo pol Buffer</td> | ||
| + | <td>3</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>dH2O</td> | ||
| + | <td>19.8</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>TOTAL</td> | ||
| + | <td>30</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | <br>->95℃ 5min ->(95℃ 1min 50℃ 30sec 72℃ 1min)x25 ->72℃ 10min | ||
| + | <br>->Gel cheack | ||
| + | <br>->MINI Prep | ||
| + | == 27,September,2008 == | ||
| Line 290: | Line 413: | ||
| + | <br>>[[Team:Chiba/jk/γ/week 5|Last Week]] | ||
| + | <br>>[[Team:Chiba/jk/γ/week 7|Next Week]] | ||
Latest revision as of 15:48, 9 October 2008
Contents |
WEEK 6
21,September,2008
22,September,2008
Time delay
23,September,2008
Digestion test
BBa_E0240
| DNA | 2 |
| EcoRⅠ | 0.5 |
| PstⅠ | 0.5 |
| BSA(x10) | 1 |
| EcoRⅠ Buffer(x10) | 1 |
| dH2O | 5 |
| TOTAL | 10 |
TRANSFORMATION
BBa_I6107
BBa_I6206
BBa_I6101
BBa_I6042
BBa_I0462
Digestion
Vector:BBa_R0062①
Insert:BBa_E0240②
Vector:BBa_I7100③
Insert:BBa_R0062④
Insert:BBa_J37033⑤
| Sample No | ① | ② | ③ | ④ | ⑤ |
| DNA | 25 | 25 | 25 | 25 | 25 |
| EcoRⅠ | - | - | 1 | 1 | - |
| SpeⅠ | 1 | - | 1 | 1 | - |
| PstⅠ | 1 | 1 | 1 | - | 1 |
| XbaⅠ | - | 1 | - | - | 1 | BSA(x10) | 4 | 4 | 4 | - | 4 |
| EcoRⅠ Buffer(x10) | - | - | 4 | 4 | - |
| Buffer 2 | 4 | - | - | - | - |
| Buffer 3 | - | 4 | - | - | 4 |
| dH2O | 5 | 5 | 5 | 9 | 5 |
| TOTAL | 40 | 40 | 40 | 40 | 40 |
->1hour 37℃
->SAP 1μl(Vector only) ->1hour 37℃ ->30min 65℃
->Zymo ->10μl
Gel cheack
| DNA | 1 |
| Loading Dye | 1 |
| dH2O | 4 |
| TOTAL | 6 |
->③&④&⑤のLigationはしない
24,September,2008
Ligation
Vector:BBa_R0062①
Insert:BBa_E0240②
| Sample No | ①&② | ① |
| DNA(vector) | 1 | 1 |
| DNA(insert) | 3.2 | - |
| Ligase | 1 | 1 |
| Ligase Buffer | 2 | 2 |
| dH2O | 2.5 | 6 |
| TOTAL | 10 | 10 |
->TRANSFORMATION
25,September,2008
colony PCR
Vector:BBa_R0062 Insert:BBa_E0240
Vector:BBa_R0062
| Sample No | each |
| culture | 1 |
| Fwd primer | 1.5 |
| Rev primer | 1.5 |
| Taq(DNA pol) | 0.2 |
| dNTPmix | 3 |
| thermo pol Buffer | 3 |
| dH2O | 19.8 |
| TOTAL | 30 |
->95℃ 5min ->(95℃ 1min 50℃ 30sec 72℃ 1min)x25 ->72℃ 10min
Digestion Test
BBa_I6206
BBa_I6101
BBa_I6042
BBa_I0462
| Sample No | each |
| DNA | 2 |
| EcoRⅠ | 0.2 |
| EcoRⅠ Buffer | 1 |
| dH2O | 7 |
| TOTAL | 30 |
->30min 37℃
Gel cheack
BBa_I6206(digestion product)
BBa_I6101(digestion product)
BBa_I6042(digestion product)
BBa_I0462(digestion product)
BBa_I0642(natural)
| Sample No | each(digestion) | I0462(natural) |
| DNA | 10 | 1 |
| Loading Dye | 2 | 1 |
| dH2O | - | 4 |
| TOTAL | 12 | 6 |
Digestion
BBa_I0462
| DNA | 25 |
| XbaⅠ | 1 |
| PstⅠ | 1 |
| Buffer 3 | 4 |
| BSA | 4 |
| dH2O | 5 |
| TOTAL | 40 |
->3hour 37℃
->Zymo ->10μl
Ligation
Vector:BBa_I7100
Insert:BBa_R0062
Insert:BBa_I0462
| I7100 | 1.3 | 1.3 |
| R0062 | 2 | - |
| I0462 | 3.3 | - |
| Ligase | 1 | 1 |
| Ligase Buffer | 2 | 2 |
| dH2O | 0.4 | 5 |
| TOTAL | 10 | 10 |
->3hour 37℃
->Transformation
26,September,2008
TIME DELAY TEST
colony PCR
Ligation product(26,September)x7
Vector:BBa_R0062
| Sample No | each |
| culture | 1 |
| Fwd primer | 1.5 |
| Rev primer | 1.5 |
| Taq(DNA pol) | 0.2 |
| dNTPmix | 3 |
| thermo pol Buffer | 3 |
| dH2O | 19.8 |
| TOTAL | 30 |
->95℃ 5min ->(95℃ 1min 50℃ 30sec 72℃ 1min)x25 ->72℃ 10min
->Gel cheack
->MINI Prep
27,September,2008
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