Template:Team:UC Berkeley/Notebook/AL sequencing

From 2008.igem.org

(Difference between revisions)
Line 179: Line 179:
| AL087 || 8-5-2008 || ihfA || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL087 | AL087]]
| AL087 || 8-5-2008 || ihfA || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL087 | AL087]]
|-
|-
-
| AL088 || 8-5-2008 || Bca1091 AC || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL088 | AL088]]
+
| AL088 || 8-5-2008 || Bca1091 AC || || Oligo ca998 || Did not work || [[Team:UC Berkeley/Notebook/AL/AL088 | AL088]]
|-
|-
| AL089 || || K112121 CA || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL089 | AL089]]
| AL089 || || K112121 CA || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL089 | AL089]]
Line 185: Line 185:
| AL090 || 8-5-2008 || Bca1112 KA || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL090 | AL090]]
| AL090 || 8-5-2008 || Bca1112 KA || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL090 | AL090]]
|-
|-
-
| AL091 || 8-5-2008 || I716211 AK || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL091 | AL091]]
+
| AL091 || 8-5-2008 || I716211 AK || || Oligo ca998 || Did not work || [[Team:UC Berkeley/Notebook/AL/AL091 | AL091]]
|-
|-
| AL092 || || K112232 KC || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL092 | AL092]]
| AL092 || || K112232 KC || || Oligo ca998 || Perfect || [[Team:UC Berkeley/Notebook/AL/AL092 | AL092]]

Revision as of 00:49, 19 October 2008

[http://andersonlab.qb3.berkeley.edu/SeqLogTemplate.xls Excel Template for Sequencing Logs]

Read Date plasmid Clone Oligo Result File
AL001 6-16-2008 pBca1256-K112300 Clone #1 Oligo ca998 Perfect AL001
AL002 6-16-2008 pBca1256-K112301 Clone #1 Oligo ca998 Perfect AL002
AL003 6-16-2008 pBca1256-K112302 Clone #1 Oligo ca998 Perfect AL003
AL004 6-16-2008 pBca1256-K112303 Clone #1 Oligo ca998 Point Mutation AL004
AL005 6-16-2008 pBca1256-K112304 Clone #1 Oligo ca998 Perfect AL005
AL006 6-16-2008 pBca1256-K112305 Clone #1 Oligo ca998 Bad Read AL006
AL007 6-16-2008 pBca1256-K112306 Clone #1 Oligo ca998 Perfect AL007
AL008 6-16-2008 pBca1256-K112307 Clone #1 Oligo ca998 Point Mutation AL008
AL009 6-16-2008 pBca1256-K112308 Clone #1 Oligo ca998 Perfect AL009
AL010 6-16-2008 pBca1256-K112309 Clone #1 Oligo ca998 Perfect AL010
AL011 6-16-2008 pBca1256-K112310 Clone #1 Oligo ca998 Point Mutation AL011
AL012 6-16-2008 pBca1256-K112311 Clone #1 Oligo ca998 Bad Read AL012
AL013 6-16-2008 pBca1256-K112312 Clone #1 Oligo ca998 Perfect AL013
AL014 6-16-2008 pBca1256-K112313 Clone #1 Oligo ca998 Point Mutation AL014
AL015 6-16-2008 pBca1256-K112314 Clone #1 Oligo ca998 Other sequence AL015
AL016 6-16-2008 pBca1256-K112315 Clone #1 Oligo ca998 Perfect AL016
AL017 6-16-2008 pBca1256-K112316 Clone #1 Oligo ca998 Bad Read AL017
AL018 6-16-2008 pBca1256-K112317 Clone #1 Oligo ca998 Perfect AL018
AL019 6-16-2008 pBca1256-K112318 Clone #1 Oligo ca998 Perfect AL019
AL020 6-16-2008 pBca1256-K112319 Clone #1 Oligo ca998 Other Sequence AL020
AL021 6-16-2008 pBca1256-K112320 Clone #1 Oligo ca998 Short Read/Point Mutation AL021
AL022 6-18-2008 pBca1256-K112303 Clone #2 Oligo ca998 Perfect AL022
AL023 6-18-2008 pBca1256-K112305 Clone #2 Oligo ca998 Other sequence AL023
AL024 6-18-2008 pBca1256-K112307 Clone #2 Oligo ca998 Perfect AL024
AL025 6-18-2008 pBca1256-K112310 Clone #2 Oligo ca998 Other Sequence AL025
AL026 6-18-2008 pBca1256-K112311 Clone #2 Oligo ca998 Other Sequence AL026
AL027 6-18-2008 pBca1256-K112313 Clone #2 Oligo ca998 Other Sequence AL027
AL028 6-18-2008 pBca1256-K112314 Clone #2 Oligo ca998 Perfect AL028
AL029 6-18-2008 pBca1256-K112316 Clone #2 Oligo ca998 Other Sequence AL029
AL030 6-18-2008 pBca1256-K112319 Clone #2 Oligo ca998 Perfect AL030
AL031 6-18-2008 pBca1256-K112320 Clone #2 Oligo ca998 Perfect AL031
AL032 6-20-2008 pBca1256-K112305 Clone #3 Oligo ca998 Perfect AL032
AL033 6-20-2008 pBca1256-K112310 Clone #3 Oligo ca998 Perfect AL033
AL034 6-20-2008 pBca1256-K112311 Clone #3 Oligo ca998 Point Mutation and Deletion AL034
AL035 6-20-2008 pBca1256-K112313 Clone #3 Oligo ca998 Point Mutation AL035
AL036 6-20-2008 pBca1256-K112316 Clone #3 Oligo ca998 Other Sequence AL036
AL037 6-24-2008 pBca1256-K112311 Clone #4 Oligo ca998 Point Mutation AL037
AL038 6-24-2008 pBca1256-K112313 Clone #4 Oligo ca998 Perfect AL038
AL039 6-24-2008 pBca1256-K112316 Clone #4 Oligo ca998 Point mutation in EcoRI site AL039
AL040 6-24-2008 pBca1256-K112319 Clone #1 Oligo ca998 Perfect AL040
AL041 6-24-2008 pBca1256-K112319 Clone #2 Oligo ca998 Perfect AL041
AL042 6-26-2008 pBca1256-K112311 Clone #5 Oligo ca998 Deletion and point mutation AL042
AL043 6-26-2008 pBca1256-K112311 Clone #6 Oligo ca998 Deletion AL043
AL044 6-27-2008 pBca1256-K112311 Clone #7 Oligo ca998 Deletion AL044
AL045 6-29-2008 pBca1256-K112311 Clone #8 Oligo ca998 Perfect AL045
AL046 6-29-2008 pBca1256-K112311 Clone #9 Oligo ca998 Perfect AL046
AL047 6-29-2008 pBca1256-K112311 Clone #10 Oligo ca998 Did not work AL047
AL048 7-06-2008 K112321 Clone #1 Oligo ca998 Did not work AL048
AL049 7-06-2008 K112321 Clone #2 Oligo ca998 Point Mutation in C-terminus AL049
AL050 7-06-2008 K112322 Clone #1 Oligo ca998 Perfect AL050
AL051 7-06-2008 K112322 Clone #2 Oligo ca998 Perfect AL051
AL052 Jin's Sequence Oligo ca998 AL052
AL053 Jin's Sequence Oligo ca998 AL053
AL054 7-12-2008 K112323 Clone #1 Oligo ca998 Some Deletions/Point Mutation Possibly from sequencing AL054
AL055 7-12-2008 K112323 Clone #2 Oligo ca998 Perfect AL055
AL056 7-22-2008 K112319 Clone #3 Oligo ca998 Turn out to be ftsAz AL056
AL057 7-19-2008 akl004 Clone #1 Oligo ca998 Lefty is a~pelB AL057
AL058 7-19-2008 Clone #1 Oligo ca998 and g00101 Lefty is a~pelB AL058
AL059 7-22-2008 akl008 Clone #1 Oligo ca998 no lefty part AL059
AL060 7-22-2008 akl007 Clone #1 Oligo ca998 wrong K112607 AL060
AL061 7-22-2008 akl010 Clone #1 Oligo ca998 wrong K112607 AL061
AL062 7-22-2008 Bca1092 A/K Clone #1 Oligo ca998 Perfect AL062
AL063 7-23-2008 K112230 A/K Clone #1 Oligo ca998 Sequence is a~pelB AL063
AL064 7-23-2008 K112608 Clone #1 Oligo ca998 Perfect (but not what we want) AL064
AL065 7-24-2008 Bca1109 Clone #1 Oligo ca998 Some Mutations but should still work AL065
AL066 7-24-2008 pBCa1256-K112229 Clone #1 Oligo ca998 Perfect AL066
AL067 7-25-2008 akl005 Clone #1 Oligo ca998 Multiple Templates AL067
AL068 7-24-2008 akl009 Clone #1 Oligo ca998 Wrong rbs_lamB> righty could be rbs pelB AL068
AL069 7-25-2008 Bca1106-A K/C Clone #1 Oligo ca998 Bad Read AL069
AL070 7-24-2008 akl008 Clone #2 Oligo ca998 {rbs_lamB>} wrong AL070
AL071 7-25-2008 Bca1109 Clone #1 Oligo g00101 Perfect AL071
AL072 7-25-2008 pBca1256-K112319 Clone #4 Oligo ca998 Perfect AL072
AL073 7-25-2008 akl002 Clone #1 Oligo ca998 Perfect AL073
AL074 7-26-2008 akl005 Clone #2 Oligo ca998 and g00101Multiple Templates AL074
AL075 7-29-2008 akl001 Clone #1 Oligo ca998 and g00101Perfect AL075
AL076 7-28-2008 Oligo ca998 AL076
AL077 Oligo ca998 AL077
AL078 Oligo ca998 AL078
AL079 Oligo ca998 AL079
AL080 Oligo ca998 AL080
AL081 Oligo ca998 AL081
AL082 Oligo ca998 AL082
AL083 Oligo ca998 AL083
AL084 Oligo ca998 AL084
AL085 Oligo ca998 AL085
AL086 Oligo ca998 AL086
AL087 8-5-2008 ihfA Oligo ca998 Perfect AL087
AL088 8-5-2008 Bca1091 AC Oligo ca998 Did not work AL088
AL089 K112121 CA Oligo ca998 Perfect AL089
AL090 8-5-2008 Bca1112 KA Oligo ca998 AL090
AL091 8-5-2008 I716211 AK Oligo ca998 Did not work AL091
AL092 K112232 KC Oligo ca998 Perfect AL092
AL093 Oligo ca998 AL093
AL094 Oligo ca998 AL094
AL095 Oligo ca998 AL095
AL096 8-6-2008 I716211 AK Oligo ca998 Did not work AL096
AL097 8-5-2008 akl004 Oligo ca998 Perfect AL097
AL098 8-5-2008 akl006 Oligo ca998 Perfect AL098
AL099 8-5-2008 akl007 Oligo ca998 Missing righty AL099
AL100 8-5-2008 akl008 Oligo ca998 Perfect AL100
AL101 8-5-2008 akl009 Oligo ca998 Perfect AL101
AL102 8-5-2008 akl010 Oligo ca998 Perfect AL102
AL103 8-5-2008 pBca9145-akl071 Oligo ca998 Wrong Sequence AL103
AL104 8-5-2008 pBca9145-akl072 Oligo ca998 Wrong Sequence AL104
AL105 8-5-2008 akl069 Oligo ca998 Perfect AL105
AL106 8-6-2008 akl019 Oligo ca998 Perfect AL106
AL107 8-6-2008 akl003 Oligo ca998 Did not work AL107
AL108 8-6-2008 akl005 Oligo ca998 Did not work AL108
AL109 8-8-2008 akl018 Oligo ca998 Wrong AL109
AL110 8-8-2008 akl070 Clone#1 Oligo ca998 Wrong AL110
AL111 8-10-2008 akl070 Clone#2 Oligo ca998 Perfect AL111
AL112 8-10-2008 akl043 Oligo ca998 Wrong Sequence AL112
AL113 8-10-2008 akl056 Oligo ca998 Did not work AL113
AL114 8-10-2008 akl057 Oligo ca998 Wrong Sequence AL114
AL115 8-12-2008 pBca1256-I716211 Clone#1(stock plate) Oligo ca998 Perfect AL115
AL116 8-16-2008 akl071 Clone#1 Oligo ca998 deletion of righty AL116
AL117 8-16-2008 akl071 Clone#2 Oligo ca998 deletion of lefty AL117
AL118 8-16-2008 akl072 Clone#1 Oligo ca998 deletion of righty AL118
AL119 8-16-2008 akl072 Clone#2 Oligo ca998 delection of righty AL119
AL120 8-17-2008 akl074 Clone#1 Oligo ca998 hairpin AL120
AL121 8-17-2008 akl074 Clone#2 Oligo ca998 hairpin AL121
AL122 8-19-2008 bjh1230-2 Clone#1 Oligo ca998 Perfect AL122
AL123 8-19-2008 bjh1231-2 Clone#1 Oligo ca998 Perfect AL123
AL124 8-19-2008 bjh1232-2 CLone#1 Oligo ca998 Perfect AL124
AL125 8-24-2008 akl007 Clone#1(AL28-A1) Oligo ca998 Perfect AL125
AL126 8-24-2008 akl007 Clone#2(AL28-A2) Oligo ca998 Perfect AL126
AL127 8-26-2008 akl018 Clone # Oligo ca998 Perfect AL127
AL128 8-31-2008 akl005-2 Clone #2 Oligo ca998 and g00101 Perfect AL128
AL129 8-31-2008 akl005-3 Clone #3 Oligo ca998 and g00101 Perfect AL129
AL130 Oligo ca998 AL130
Retrieved from "http://2008.igem.org/Template:Team:UC_Berkeley/Notebook/AL_sequencing"