"
Team:UNIPV-Pavia/Parts
From 2008.igem.org
(Difference between revisions)
| Line 36: | Line 36: | ||
|Test | |Test | ||
|- | |- | ||
| - | |<font color="green">'' | + | |<font color="green">'''K081005'''</font> |
|<font color="green">'''02'''</font> | |<font color="green">'''02'''</font> | ||
|<font color="green">'''J23100-B0030'''</font> | |<font color="green">'''J23100-B0030'''</font> | ||
| Line 43: | Line 43: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">'' | + | |<font color="green">'''K081006'''</font> |
|<font color="green">'''03'''</font> | |<font color="green">'''03'''</font> | ||
|<font color="green">'''R0051-B0030'''</font> | |<font color="green">'''R0051-B0030'''</font> | ||
| Line 50: | Line 50: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''S04119'''</font> |
|<font color="green">'''04'''</font> | |<font color="green">'''04'''</font> | ||
|<font color="green">'''B0030-E0040'''</font> | |<font color="green">'''B0030-E0040'''</font> | ||
| Line 57: | Line 57: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081007'''</font> |
|<font color="green">'''05'''</font> | |<font color="green">'''05'''</font> | ||
|<font color="green">'''B0030-C0051'''</font> | |<font color="green">'''B0030-C0051'''</font> | ||
| Line 64: | Line 64: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''BBa_S04120'''</font> |
|<font color="green">'''06'''</font> | |<font color="green">'''06'''</font> | ||
|<font color="green">'''23100-E1010'''</font> | |<font color="green">'''23100-E1010'''</font> | ||
| Line 71: | Line 71: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081008'''</font> |
|<font color="green">'''07'''</font> | |<font color="green">'''07'''</font> | ||
|<font color="green">'''B0030-C0061'''</font> | |<font color="green">'''B0030-C0061'''</font> | ||
| Line 78: | Line 78: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081009'''</font> |
|<font color="green">'''08'''</font> | |<font color="green">'''08'''</font> | ||
|<font color="green">'''B0030-C0078'''</font> | |<font color="green">'''B0030-C0078'''</font> | ||
| Line 92: | Line 92: | ||
|style="background:gray"|Intermediate | |style="background:gray"|Intermediate | ||
|- | |- | ||
| - | |'' | + | |''K081010'' |
|10 | |10 | ||
|J23100-B0030-C0040 | |J23100-B0030-C0040 | ||
| Line 106: | Line 106: | ||
|style="background:red; color:white"|Intermediate | |style="background:red; color:white"|Intermediate | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081011'''</font> |
|<font color="green">'''12'''</font> | |<font color="green">'''12'''</font> | ||
|<font color="green">'''R0051-B0030-C0062'''</font> | |<font color="green">'''R0051-B0030-C0062'''</font> | ||
| Line 113: | Line 113: | ||
|<font color="green">'''Intermediate'''</font> | |<font color="green">'''Intermediate'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081012'''</font> |
|<font color="green">'''13'''</font> | |<font color="green">'''13'''</font> | ||
|<font color="green">'''B0030-E0040-B1006'''</font> | |<font color="green">'''B0030-E0040-B1006'''</font> | ||
| Line 120: | Line 120: | ||
|<font color="green">'''GFP protein generator with 39bp artificial terminator'''</font> | |<font color="green">'''GFP protein generator with 39bp artificial terminator'''</font> | ||
|- | |- | ||
| - | |'' | + | |<font color="green">'''K081013'''</font> |
| - | |14 | + | |<font color="green">'''14'''</font> |
| - | |B0030-C0051-B0030 | + | |<font color="green">'''B0030-C0051-B0030'''</font> |
| - | |RBS-cI-RBS | + | |<font color="green">'''RBS-cI-RBS'''</font> |
| - | |pSB1A2 | + | |<font color="green">'''pSB1A2'''</font> |
| - | |Intermediate | + | |<font color="green">'''Intermediate'''</font> |
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081014'''</font> |
|<font color="green">'''15'''</font> | |<font color="green">'''15'''</font> | ||
|<font color="green">'''B0030-E1010-B1006'''</font> | |<font color="green">'''B0030-E1010-B1006'''</font> | ||
| Line 134: | Line 134: | ||
|<font color="green">'''GFP protein generator with 39bp artificial terminator'''</font> | |<font color="green">'''GFP protein generator with 39bp artificial terminator'''</font> | ||
|- | |- | ||
| - | |'' | + | |''K081015'' |
|16 | |16 | ||
|B0030-C0061-B1006 | |B0030-C0061-B1006 | ||
| Line 141: | Line 141: | ||
|luxI protein generator RCT | |luxI protein generator RCT | ||
|- | |- | ||
| - | |'' | + | |''K081016'' |
|17 | |17 | ||
|B0030-C0078-B1006 | |B0030-C0078-B1006 | ||
| Line 148: | Line 148: | ||
|lasI protein generator RCT | |lasI protein generator RCT | ||
|- | |- | ||
| - | |'' | + | |''K081017'' |
|18 | |18 | ||
|B0030-I15009 | |B0030-I15009 | ||
| Line 162: | Line 162: | ||
|style="background:gray"|lacI protein generator PRCT | |style="background:gray"|lacI protein generator PRCT | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081018'''</font> |
|<font color="green">'''20'''</font> | |<font color="green">'''20'''</font> | ||
|<font color="green">'''J23100-B0030-C0040-B1006'''</font> | |<font color="green">'''J23100-B0030-C0040-B1006'''</font> | ||
| Line 176: | Line 176: | ||
|style="background:red; color:white"|Intermediate | |style="background:red; color:white"|Intermediate | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081019'''</font> |
|<font color="green">'''22'''</font> | |<font color="green">'''22'''</font> | ||
|<font color="green">'''R0051-B0030-C0062-B1006'''</font> | |<font color="green">'''R0051-B0030-C0062-B1006'''</font> | ||
| Line 183: | Line 183: | ||
|<font color="green">'''Plambda regulated luxR protein generator PRCT'''</font> | |<font color="green">'''Plambda regulated luxR protein generator PRCT'''</font> | ||
|- | |- | ||
| - | |'' | + | |''K081020'' |
|23 | |23 | ||
|B0030-C0051-B0030-C0079 | |B0030-C0051-B0030-C0079 | ||
| Line 190: | Line 190: | ||
|Intermediate | |Intermediate | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081000'''</font> |
|<font color="green">'''24'''</font> | |<font color="green">'''24'''</font> | ||
|<font color="green">'''B0030-C0061-B1006-R0062'''</font> | |<font color="green">'''B0030-C0061-B1006-R0062'''</font> | ||
| Line 197: | Line 197: | ||
|<font color="green">'''Mux - Channel 0'''</font> | |<font color="green">'''Mux - Channel 0'''</font> | ||
|- | |- | ||
| - | |<font color="green">''' | + | |<font color="green">'''K081001'''</font> |
|<font color="green">'''25'''</font> | |<font color="green">'''25'''</font> | ||
|<font color="green">'''B0030-C0078-B1006-R0079'''</font> | |<font color="green">'''B0030-C0078-B1006-R0079'''</font> | ||
| Line 204: | Line 204: | ||
|<font color="green">'''Mux - Channel 1'''</font> | |<font color="green">'''Mux - Channel 1'''</font> | ||
|- | |- | ||
| - | |'' | + | |''K081021'' |
|26 | |26 | ||
|B0030-I15009-B1006 | |B0030-I15009-B1006 | ||
| Line 232: | Line 232: | ||
|style="background:red; color:white"|Intermediate | |style="background:red; color:white"|Intermediate | ||
|- | |- | ||
| - | |<font color="red">''' | + | |<font color="red">'''K081022'''</font> |
|<font color="red">'''30'''</font> | |<font color="red">'''30'''</font> | ||
|<font color="red">'''R0051-B0030-C0062-B1006-R0062'''</font> | |<font color="red">'''R0051-B0030-C0062-B1006-R0062'''</font> | ||
| Line 239: | Line 239: | ||
|<font color="red">'''luxR composite part: Plambda regulated PRCT-Plux'''</font> | |<font color="red">'''luxR composite part: Plambda regulated PRCT-Plux'''</font> | ||
|- | |- | ||
| - | |<font color="blue">''' | + | |<font color="blue">'''K081023'''</font> |
|<font color="blue">'''31'''</font> | |<font color="blue">'''31'''</font> | ||
|<font color="blue">'''B0030-C0051-B0030-C0079-B1006'''</font> | |<font color="blue">'''B0030-C0051-B0030-C0079-B1006'''</font> | ||
| Line 246: | Line 246: | ||
|<font color="blue">'''cI-lasR protein generator RCRCT'''</font> | |<font color="blue">'''cI-lasR protein generator RCRCT'''</font> | ||
|- | |- | ||
| - | |'' | + | |''K081024'' |
|32 | |32 | ||
|B0030-I15009-B1006-R0082 | |B0030-I15009-B1006-R0082 | ||
| Line 260: | Line 260: | ||
|style="background:red; color:white"|Light responsive system under constitutive promoter: PRCRCRCT-Pomp | |style="background:red; color:white"|Light responsive system under constitutive promoter: PRCRCRCT-Pomp | ||
|- | |- | ||
| - | |<font color="red">''' | + | |<font color="red">'''K081004'''</font> |
|<font color="red">'''34'''</font> | |<font color="red">'''34'''</font> | ||
|<font color="red">'''B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006-R0062'''</font> | |<font color="red">'''B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006-R0062'''</font> | ||
| Line 267: | Line 267: | ||
|<font color="red">'''Demux - Selector'''</font> | |<font color="red">'''Demux - Selector'''</font> | ||
|- | |- | ||
| - | |<font color="blue">''' | + | |<font color="blue">'''K081002'''</font> |
|<font color="blue">'''35'''</font> | |<font color="blue">'''35'''</font> | ||
|<font color="blue">'''B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006'''</font> | |<font color="blue">'''B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006'''</font> | ||
| Line 274: | Line 274: | ||
|<font color="blue">'''Mux - Selector'''</font> | |<font color="blue">'''Mux - Selector'''</font> | ||
|- | |- | ||
| - | |<font color="blue">''' | + | |<font color="blue">'''K081003'''</font> |
|<font color="blue">'''36'''</font> | |<font color="blue">'''36'''</font> | ||
|<font color="blue">'''B0030-C0061-B0030-C0078-B1006-R0079'''</font> | |<font color="blue">'''B0030-C0061-B0030-C0078-B1006-R0079'''</font> | ||
Revision as of 16:29, 26 October 2008
 Home
|  The Team
|  The Project
|  Biological Safety
|  Parts Submitted to the Registry
|
|---|---|---|---|---|
 Dry Lab
|  Wet Lab
|  Modeling
|  Protocols
|  Activity Notebook
|
Assembled Parts Notation
In notebook section we sometimes use abbreviations to name assembled parts. New parts' official name, notebook abbreviations and new parts description are reported in the following table:
| New Part | Notebook Name | Assembled Parts(code) | Assembled Parts(name) | Vector | Description |
|---|---|---|---|---|---|
| - | 01 | J23100-E0240 | Pcon-GFP_protein_generator | J61002 | Test |
| K081005 | 02 | J23100-B0030 | Pcon-RBS | pSB1A2 | Intermediate |
| K081006 | 03 | R0051-B0030 | Plambda-RBS | pSB1A2 | Intermediate |
| S04119 | 04 | B0030-E0040 | RBS-GFP | pSB1A2 | Intermediate |
| K081007 | 05 | B0030-C0051 | RBS-cI | pSB1A2 | Intermediate |
| BBa_S04120 | 06 | 23100-E1010 | RBS-RFP | pSB1A2 | Intermediate |
| K081008 | 07 | B0030-C0061 | RBS-luxI | pSB1A2 | Intermediate |
| K081009 | 08 | B0030-C0078 | RBS-lasI | pSB1A2 | Intermediate |
| - | 09 | J23100-B0030-C0012 | Pcon-RBS-lacI | pSB1A2 | Intermediate |
| K081010 | 10 | J23100-B0030-C0040 | Pcon-RBS-tetR | pSB1A2 | Intermediate |
| - | 11 | J23100-B0030-I15010 | Pcon-RBS-cph8 | pSB1A2 | Intermediate |
| K081011 | 12 | R0051-B0030-C0062 | Plambda-RBS-luxR | pSB1A2 | Intermediate |
| K081012 | 13 | B0030-E0040-B1006 | RBS-GFP-T | pSB1AK3 | GFP protein generator with 39bp artificial terminator |
| K081013 | 14 | B0030-C0051-B0030 | RBS-cI-RBS | pSB1A2 | Intermediate |
| K081014 | 15 | B0030-E1010-B1006 | RBS-RFP-T | pSB1AK3 | GFP protein generator with 39bp artificial terminator |
| K081015 | 16 | B0030-C0061-B1006 | RBS-luxI-T | pSB1AK3 | luxI protein generator RCT |
| K081016 | 17 | B0030-C0078-B1006 | RBS-lasI-T | pSB1AK3 | lasI protein generator RCT |
| K081017 | 18 | B0030-I15009 | RBS-pcyA | pSB1A2 | Intermediate |
| - | 19 | J23100-B0030-C0012-B1006 | Pcon-RBS-lacI-T | pSB1AK3 | lacI protein generator PRCT |
| K081018 | 20 | J23100-B0030-C0040-B1006 | Pcon-RBS-tetR-T | pSB1AK3 | tetR protein generator PCRT |
| - | 21 | J23100-B0030-I15010-B0030 | Pcon-RBS-cph8-RBS | ? | Intermediate |
| K081019 | 22 | R0051-B0030-C0062-B1006 | Plambda-RBS-luxR-T | pSB1AK3 | Plambda regulated luxR protein generator PRCT |
| K081020 | 23 | B0030-C0051-B0030-C0079 | RBS-cI-RBS-lasR | pSB1A2 | Intermediate |
| K081000 | 24 | B0030-C0061-B1006-R0062 | RBS-luxI-T-Plux | pSB1A2 | Mux - Channel 0 |
| K081001 | 25 | B0030-C0078-B1006-R0079 | RBS-lasI-T-Plas | pSB1A2 | Mux - Channel 1 |
| K081021 | 26 | B0030-I15009-B1006 | RBS-pcyA-T | pSB1AK3 | pcyA protein generator RCT |
| - | 27 | J23100-B0030-C0012-B1006-R0010 | Pcon-RBS-lacI-T-Plac | pSB1AK3 | lacI composite part: PRCT-Plac |
| - | 28 | J23100-B0030-C0040-B1006-R0040 | Pcon-RBS-tetR-T-Ptet | pSB1A2 | tetR composite part: PRCT-Ptet |
| - | 29 | J23100-B0030-I15010-B0030-I15008 | Pcon-RBS-cph8-RBS-ho1 | ? | Intermediate |
| K081022 | 30 | R0051-B0030-C0062-B1006-R0062 | Plambda-RBS-luxR-T-Plux | pSB1A2 | luxR composite part: Plambda regulated PRCT-Plux |
| K081023 | 31 | B0030-C0051-B0030-C0079-B1006 | RBS-cI-RBS-lasR-T | pSB1AK3 | cI-lasR protein generator RCRCT |
| K081024 | 32 | B0030-I15009-B1006-R0082 | RBS-pcyA-T-Pomp | pSB1A2 | pcyA composite part: RCT-Pomp |
| - | 33 | J23100-B0030-I15010-B0030-I15008-B0030-I15009-B1006-R0082 | Pcon-RBS-cph8-RBS-ho1-RBS-pcyA-T-Pomp | ? | Light responsive system under constitutive promoter: PRCRCRCT-Pomp |
| K081004 | 34 | B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006-R0062 | RBS-cI-RBS-lasR-T-Plambda-RBS-luxR-T-Plux | pSB1AK3 | Demux - Selector |
| K081002 | 35 | B0030-C0051-B0030-C0079-B1006-R0051-B0030-C0062-B1006 | RBS-cI-RBS-lasR-T-Plambda-RBS-luxR-T | pSB1AK3 | Mux - Selector |
| K081003 | 36 | B0030-C0061-B0030-C0078-B1006-R0079 | RBS-luxI-RBS-lasI-T-Plas | pSB1A2 | Demux - Input |
- 01 part has not been submitted to the registry because it was a test assembly.
- Red-highlighted parts (11, 21, 29, 33) contain I15010 (cph8): according to IGEM DNA Repositories Quality Control (and according to our results) the sequence is inconsistent and so these parts cannot be assembled.
- Green-coloured parts have been succesfully sequenced.
- Blue-coloured parts are long parts and have not been totally sequenced. The sequenced portions were correct.
- Red-coloured parts have been sequenced and a point mutation in C0062 coding sequence (position 349, G->C) was noticed, but these parts have been succesfully tested and so we decided to submit them.
- 24, 25, 34, 35, 36 are part of our final Mux or Demux systems.
- Sequencing results of all the sequenced parts containing C0061 and C0078 showed that these two coding sequences have an undocumented barcode downstream. This should be documented on C0061 and C0078 Registry pages!
- Parts in gray were programmed, but they have not been assembled and so they haven't been submitted.
