Team:Warsaw/Calendar-Main/10 July 2008

From 2008.igem.org

(Difference between revisions)
 
(26 intermediate revisions not shown)
Line 2: Line 2:
<!-- do not edit above me! -->
<!-- do not edit above me! -->
 +
<html>
-
<p>'''Preparation of constructs with OmpA protein fusions'''<br>
+
 
-
1. Isolation of plasmids from cultures inocluated on previous day. <br>
+
<h3>Preparation of construct <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A">pKS with A protein</a></h3>
-
2. Control digestation of isolated plasmids with BamHI and NotI (we confirmed pCACYC177 + OmpA_omega). We didn't obtain pCACYC177 + OmpA_alpha probably because mistake in plating. <br>
+
<h4>Michał L., Marcin</h4>
-
3. Ligation of pACYC177 and OmpA_alpha (1 hr)<br>
+
<p><ol>
-
4. Transformation of E. coli TOP10 strain with ligation pACYC177 and OmpA_alpha. <br>
+
<li> Inactivation of restriction enzymes and CIAP.</li>
-
5. Transformants plating on LB + kanamycin.<br>
+
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of digested PCR product and <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII%2B">pKS</a> for 2h at room temperature.</li>
-
'''Ligation of protein Z DNA to OmpA constructs'''<br>
+
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Transformation</a> of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a> strain with 7 µl of ligation mix.</li>
-
1. Digestation of Geneart_Z and pACYC177+OmpA_omega with SacI and NotI (pACYC177 was also dephosphorylated with CIAP)(3 hr).<br>
+
<li> Transformants plating on LB + ampicillin + X-gal + IPTG.</li></ol></p>
-
2. Gel electrophoresis and gel-out of proper bands 220 bp (for Geneart_Z lane)and 4050 bp (pACYC177+OmpA_omega lane). <br>
+
 
-
3. Ligation of pACYC177+OmpA_omega and Z (1 hr). <br>
+
 
-
4. Transformation of E. coli TOP10 strain with ligation. <br>
+
<h3>Cloning of protein Z DNA to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b-OmpA-alpha</a> in place of OmpA</h3><h4>Piotr, Antoni</h4>
-
5. . Transformants plating on LB + kanamycin.
+
<p><ol><li>Result of ligation of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-omega>pET15b-OmpA-alpha </a> with protein Z DNA: 16 colonies grown.</li>
 +
<li>Each colony cultured overnight in LB + ampicilin.</li>
 +
</ol>
</p>
</p>
 +
<h3>Preparation of constructs: OmpA_alpha and OmpA_omega #2</h3>
 +
<h4> Michał K.</h4><p><ol>
 +
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmids</a> from cultures inocluated on previous day. </li>
 +
<li> Control <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">digest</a> of isolated plasmids with BamHI and NotI (BamHI buffer).
 +
</li>
 +
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/10_July_2008#fig1">Fig. 1.</a>) - we confirmed <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega">pACYC177 + OmpA_omega</a>. We didn't obtain <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-alpha">pACYC177 + OmpA_alpha</a> probably because of a mistake in plating. </li>
 +
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177">pACYC177</a> and OmpA_alpha (1 hr).</li>
 +
<li> Transformation of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a> strain with ligation products: <a href="https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-alpha">pACYC177 and OmpA_alpha</a>.</li>
 +
<li> Transformants plating on LB + kanamycin.</li>
 +
</ol></p>
 +
 +
 +
<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/9/9c/Trawienie_5_th_july.jpg" width=300 /></a><var><b>Fig. 1. </b>Control BamHI and NotI digests  of plasmids, which were used in successful colony PCRs <b></b><br>
 +
1. Marker<br>
 +
2. slot 1. from yesterday's Omp_A_alpha colony PCR<br>
 +
2. slot 14. from yesterday's Omp_A_alpha colony PCR<br>
 +
2. slot 4. from yesterday's Omp_A_omega colony PCR<br>
 +
2. slot 10. from yesterday's Omp_A_omega colony PCR<br>
 +
</html>
<!-- do not remove this! -->
<!-- do not remove this! -->
{{WarNotebookEnd}}
{{WarNotebookEnd}}

Latest revision as of 17:54, 26 October 2008

Gallery Bricks Notebook Team Project Home


Previous day
return to main notebook page
Previous entry
next notebook entry

 


Preparation of construct pKS with A protein

Michał L., Marcin

  1. Inactivation of restriction enzymes and CIAP.
  2. Ligation of digested PCR product and pKS for 2h at room temperature.
  3. Transformation of E. coli TOP10 strain with 7 µl of ligation mix.
  4. Transformants plating on LB + ampicillin + X-gal + IPTG.

Cloning of protein Z DNA to pET15b-OmpA-alpha in place of OmpA

Piotr, Antoni

  1. Result of ligation of pET15b-OmpA-alpha with protein Z DNA: 16 colonies grown.
  2. Each colony cultured overnight in LB + ampicilin.

Preparation of constructs: OmpA_alpha and OmpA_omega #2

Michał K.

  1. Isolation of plasmids from cultures inocluated on previous day.
  2. Control digest of isolated plasmids with BamHI and NotI (BamHI buffer).
  3. Gel electrophoresis (Fig. 1.) - we confirmed pACYC177 + OmpA_omega. We didn't obtain pACYC177 + OmpA_alpha probably because of a mistake in plating.
  4. Ligation of pACYC177 and OmpA_alpha (1 hr).
  5. Transformation of E. coli TOP10 strain with ligation products: pACYC177 and OmpA_alpha.
  6. Transformants plating on LB + kanamycin.

Fig. 1. Control BamHI and NotI digests of plasmids, which were used in successful colony PCRs
1. Marker
2. slot 1. from yesterday's Omp_A_alpha colony PCR
2. slot 14. from yesterday's Omp_A_alpha colony PCR
2. slot 4. from yesterday's Omp_A_omega colony PCR
2. slot 10. from yesterday's Omp_A_omega colony PCR