Team:Michigan/Project

(Difference between revisions)

Revision as of 05:05, 28 October 2008

HOME	THE TEAM	THE PROJECT	REGISTRY PARTS	NOTEBOOK

Project Description Circadian Clocks Short background on circadian clocks... why they're important, why they're studied, maybe who studies them... Our Project: The Sequestillator We can subdivide our clock into three parts: the tetR system, the activator module, and the repressor module. The activator module consists of the tet promoter driving the NifA gene. The NifA protein binds to the nifHp promoter of the repressor module, activating transcription of the NifL gene. Once NifL dimerizes, it can bind to the NifA hexamer, hence preventing NifA from binding to NifHp. This sequestration effect provides the clock's negative feedback loop that is essential for oscillations. The tetR system regulates the levels of nifA. A constitutive promoter drives the TetR gene. At its resting state of our circuit, TetR completely represses the production of NifA. However, addition of anhydrotetracycline prevents the Tet protein from binding to tet promoter, allowing for a "constitutive" production of NifA as long as the levels of anhydrotetracycline are kept constant. This module allows us to tune the levels of NifA by adjusting the amount of anhydrotetracycline we add.

Sequestilator Modeling Team:Michigan/Project/Modeling	Sequestilator Fabrication If you like the way this looks, you could put a summary of what you built here and then we can have a separate page for fabrication, which might be a good idea. Team:Michigan/Project/Fabrication

Landing Pads A landing pad is tool used to place synthetic operons on a chromosome. We will be using two landing pads for our project: the arabinose landing pad and leucine landing pad. Both of these plasmids will replace the respective metabolic operons with our desired subcloned genetic elements. The leucine landing pad was constructed by a former member of the Ninfa lab, Dong Eun Chang. The arabinose landing pad was a part of our iGEM 2007 project, and was worked on by Alyssa Delke and Khalid Miri. Our reason for using these pieces is to limit the noise in our system so that hopefully we can see more sustained oscillations than previous synthetic clocks have given. BioBrick Landing Pad Polylinker Arabinose Landing Pad with our second operon inserted [http://synthbio.engin.umich.edu/wiki/index.php/BioBrick_Landing_Pad Learn more about Landing Pads Here!]

Revision as of 04:58, 28 October 2008 (view source) Alyssade (Talk \| contribs) ← Older edit		Revision as of 05:05, 28 October 2008 (view source) Alyssade (Talk \| contribs) Newer edit →
Line 17:		Line 17:


-	<br><div align=center>[[Image:Full topology.png]]</div><br>	+	<br><div align=center>[[Image:Full topology - gold.png]]</div><br>

	We can subdivide our clock into three parts: the tetR system, the activator module, and the repressor module. The activator module consists of the tet promoter driving the NifA gene. The NifA protein binds to the nifHp promoter of the repressor module, activating transcription of the NifL gene. Once NifL dimerizes, it can bind to the NifA hexamer, hence preventing NifA from binding to NifHp. This sequestration effect provides the clock's negative feedback loop that is essential for oscillations.		We can subdivide our clock into three parts: the tetR system, the activator module, and the repressor module. The activator module consists of the tet promoter driving the NifA gene. The NifA protein binds to the nifHp promoter of the repressor module, activating transcription of the NifL gene. Once NifL dimerizes, it can bind to the NifA hexamer, hence preventing NifA from binding to NifHp. This sequestration effect provides the clock's negative feedback loop that is essential for oscillations.