Team:PennState/MedalChecklist

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<p class="start">A common framework for gene expression at bacterial catabolic operons involves dual regulation by a global regulatory protein and a catabolite-specific regulator (e.g., AraC in the case of expression from promoter PBAD).  In <em>E. coli</em>, the cAMP-receptor protein (CRP) acts as a global regulator in which the cAMP-CRP complex typically increases transcription at catabolic promoters in the absence of the “preferred” catabolite glucose. The result is a phenomenon known as diauxie, in which glucose is preferentially utilized in the presence of other sugars, since expression of catabolic pathways for the other sugars is not fully induced.  A consequence of this dual control mechanism is that many bacterial promoters commonly used in biotechnology require the absence of glucose for full transcription activation (e.g., the <em>lac</em> and <em>araBAD</em> promoters).</p>
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<p>In wild-type <em>E. coli</em> strains, the promoters controlling expression of genes responsible for xylose transport and metabolism are regulated by CRP and the xylose-inducible protein XylR. Our goal in this project is to create and characterize a xylose-inducible but glucose-insensitive gene expression system. This would functionally eliminate a diauxie-type phenotype relating to induction of gene expression from this promoter.  In addition to creating a valuable new tool for the part registry, this project has useful applications for biochemical and bioenergy production.  Cellulosic biomass feedstocks targeted for biofuel production or other value-added products contain large percentages of glucose and xylose.  In industrial fermentations, cells grown on sugars from cellulosic biomass normally consume glucose as their first carbon source.  Then, depending on the process, cells either change gene expression to utilize xylose, or the cells and leftover sugars are removed as waste.  Both situations lead to inefficiency in production, especially if a continuous growth process is desired. Growing cells on multiple sugars results in a lag time as the cells switch from glucose to xylose metabolism, which complicates and delays the overall process.  The gene expression system we are creating could aid in the simultaneous fermentation of mixed sugars, and would have practical applications during the conversion of biomass to ethanol, and for other processes using bacteria for fermentation of low-cost sugar mixtures.</p>
 
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<dt>Bronze Medal</dt>
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<dd>We registered our team, had a great summer, and will have fun attending the Jamboree!</dd>
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<dd>We successfully completed and submitted a Project Summary form.</dd>
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<dd>We created and shared a Description of the team's project via the iGEM wiki (your here!)</dd>
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<dd>We will Present a Poster and Talk at the iGEM Jamboree</dd>
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<dd>We entered information and submitted DNA for multiple biobricks - see our <a href="https://2008.igem.org/Team:PennState/Parts" title="Penn State's 2008 iGEM parts">parts page.</a></dd>
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<dt>Silver Medal</dt>
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<dd>We demonstrated that our submitted parts work and characterized them with extensive testing - see our <a href="https://2008.igem.org/Team:PennState/diauxie/progress" title="Penn State's 2008 iGEM progress">progress page!</a></dd>
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<dt>Gold Medal</dt>
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  <dd>This fall we visited with Johns Hopkins and UVA to discuss how our teams operate and what we have been working on this summer. While there we gave a practice presentation and exchanged thoughts about eachother's teams operation and project. We also had a great time!</dd>
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Latest revision as of 03:38, 30 October 2008

Diauxie Elimination

Introduction
The System
Strategies
Progress
Conclusions
Parts
References

NHR Biosensors

NHR Introduction
Phthalate Biosensor
BPA Biosensor
Medal Checklist
Bronze Medal
We registered our team, had a great summer, and will have fun attending the Jamboree!
We successfully completed and submitted a Project Summary form.
We created and shared a Description of the team's project via the iGEM wiki (your here!)
We will Present a Poster and Talk at the iGEM Jamboree
We entered information and submitted DNA for multiple biobricks - see our parts page.
Silver Medal
We demonstrated that our submitted parts work and characterized them with extensive testing - see our progress page!
Gold Medal
This fall we visited with Johns Hopkins and UVA to discuss how our teams operate and what we have been working on this summer. While there we gave a practice presentation and exchanged thoughts about eachother's teams operation and project. We also had a great time!