Team:Imperial College

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Latest revision as of 09:06, 30 October 2008

For the 2008 iGEM competition, the Imperial College Team aims to develop a genetically-engineered Biofabricator, using the Gram-positive bacterium Bacillus subtilis as our chassis. Our Biofabricator aims to produce self-assembling biomaterials in specified 3D shapes, using light as the trigger.

Pushed for time? Project Summary | Achievements | Growing Clothes: BioCouture

Overview

The following video is a simplified representation of how we want our system to work...

First by utilising an endogenous light-sensing mechanism, the bacteria is captured in the desired location using 3D holography.
Next bacterial locomotion is suspended in the region of interest using a recently-discovered clutch mechanism. This involves disengaging the flagellum from the motor protein.
Finally, when our bacteria are stationary in the correct location, the biomaterial production is triggered. These biomaterials can self-assemble to form a 3D bio-scaffold.

Please continue on to our project pages - you may wish to start with our >>> Project Specifications >>>

The Imperial College Team 2008 has received sponsorship from a number of generous companies. We are grateful for their kind support.

We would also like to thank the members of the Center for Structural Biology for their help and support during our iGEM project.

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-{{Imperial/StartPage}}
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+<!--{{Imperial/Box2||<html><center>Welcome to the Imperial 2008 iGEM project page. It's </html>{{CURRENTDAYNAME}}<html>, </html>{{CURRENTMONTHNAME}}<html> </html>{{CURRENTDAY}}<html> and a great day to read about an awesome iGEM project!</center></html><br>|}}-->
+{{Imperial/Box1||
+<html><center><img width="830px" src="https://static.igem.org/mediawiki/2008/9/94/Imperial_2008_Title.png"></center><font size="4pt"></html><center>'''<br>For the 2008 iGEM competition, the Imperial College Team aims to develop a genetically-engineered Biofabricator, using the Gram-positive bacterium ''Bacillus subtilis'' as our chassis. Our Biofabricator aims to produce self-assembling biomaterials in specified 3D shapes, using light as the trigger.'''<br><br><html></font>
+<table style="color:#2B48B3;background-color:transparent;"><tr><td><img style="vertical-align:center;" width="380px" src="http://i59.photobucket.com/albums/g305/Timpski/Logo1.png"></td>
+<!--<td style="text-align:center;"><br><i><font size="3pt" style="border:2px solid;padding:7px;"><b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/BioBricks">45 B. subtilis BioBricks submitted!</a></b></font><br><br><font size="3pt" style="border:2px solid;padding:7px;"><b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Major_Results">BioBrick Characterisation</a></b></font><br><br><font size="3pt" style="border:2px solid;padding:7px;"><b>Chassis Characterisation</b></font><br><br><font size="3pt" style="border:2px solid;padding:7px;">Cell <b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Motility">motility tracking</a></b></font><br><br><font size="3pt" style="border:2px solid;padding:7px;">Extensive <b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Dry_Lab">modelling</a></b></font></i>-->
+</td></tr></table><br><hr><center><font size="4pt" style="border:0px solid;padding:10px;">Pushed for time? <b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Summary">Project Summary</a> | <a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Summary#Results">Achievements</a> | Growing Clothes: <b><a target="_blank" href="https://2008.igem.org/Team:Imperial_College/Cellulose">BioCouture</a></b></font></center><hr><br></html>
+|}}
-[[Image:Imperial_2008_Logo.png|center|400px]]
+{{Imperial/Box1|'''<html><font size=6px>Overview</font></html>'''|
+The following video is a simplified representation of how we want our system to work...
+<html><center><object width="425" height="350"> <param name="movie" value="http://www.youtube.com/v/pqEmKkY5DxA"> </param> <embed src="http://www.youtube.com/v/pqEmKkY5DxA" type="application/x-shockwave-flash" width="425" height="350"> </embed> </object></center></html>
+*First by utilising an endogenous light-sensing mechanism, the bacteria is captured in the desired location using 3D holography.
+*Next bacterial locomotion is suspended in the region of interest using a recently-discovered clutch mechanism. This involves disengaging the flagellum from the motor protein.
+*Finally, when our bacteria are stationary in the correct location, the biomaterial production is triggered. These biomaterials can self-assemble to form a 3D bio-scaffold.
+<html><center><img width="800px" src="http://i59.photobucket.com/albums/g305/Timpski/Comic_No_Title.png"></center></html>
+<br>
+'''<html><center><font size=4px></html>Please continue on to our project pages - you may wish to start with our [[Team:Imperial_College/Project |>>> Project Specifications >>>''']]<html></font></center></html>
+<br>
+}}
-<hr>
+<hr><br>
-<center>Welcome to the Imperial 2008 iGEM team's main project page. It's {{CURRENTDAYNAME}}, {{CURRENTMONTHNAME}} {{CURRENTDAY}} and a great day to read about an awesome iGEM project!</center>
+{{Imperial/Box1||
-<hr>
+The Imperial College Team 2008 has received sponsorship from a number of generous companies. We are grateful for their kind support.
+<html><center><a href="http://www.bio-rad.com/"><img height="40px" src="http://i59.photobucket.com/albums/g305/Timpski/Biorad.png"></a><a href="http://www.fisher.co.uk/"><img height="50px" src="http://i59.photobucket.com/albums/g305/Timpski/Fisher.png"></a><a href="http://www.geneart.com/"><img height="25px" src="http://i59.photobucket.com/albums/g305/Timpski/Geneart.png"></a><a href="http://www.vwr.com/index.htm"><img height="50px" src="http://i59.photobucket.com/albums/g305/Timpski/VWR.png"></a></center>
+<center>We would also like to thank the members of the Center for Structural Biology for their help and support during our iGEM project.</center></html>
+}}
+<br clear="all"><html><center><table style="color:#ffffff;background-color:#66aadd;" cellpadding="3" cellspacing="1" border="0" bordercolor="#ffffff" align="center">
-{| width=100%
+<tr><td><ul id="sddm"></html>< Previous<html></ul>
-| For the 2008 iGEM competition, the Imperial College team is working on the foundations for a bioprinter. We are using the Gram-positive ''Bacillus subtilis'' bacterium as our chassis (for a variety of reasons) and hope to exert fine control over its movement via a recently-discovered clutch mechanism[http://www.sciencemag.org/cgi/content/full/sci;320/5883/1636]. Using light as a stimulus to localise the bacteria, we then intend to trigger production and secretion of a self-assembling bio-scaffold material in a set pattern. The project was inspired by 3D printers used in fabrication of prototypes for manufacturing, and our "blue-sky" aim is to make a 3D bioprinter!
+</td><td><ul id="sddm"><a href="#">Back to top</a></ul>
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+</td><td><ul id="sddm"></html>[[Team:Imperial_College/Project |Next >]]<html></ul>
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-! align=left colspan=1 |The Team || rowspan=2 |[[Image:Imperial_2008_Big_Team_Photo.jpg|216px|Prudence is taking the picture... Click for larger image!]] || bgcolor="#33bbff" rowspan=2|
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-| colspan=1 valign=top |The Imperial College 2008 iGEM team consists of nine undergraduates (five bioengineers, three biochemists and one biologist), five advisors and two professors. You can find out more about the team members at the [[Team:Imperial_College/Team | team page]].
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-| [[Image:Imperial_2008_Bioprinter_Cartoon.png |450px| Overview of our planned system]]
-| valign="top" |This diagram gives a basic overview of how we intend our system to work. In the starting phase, ''B. subtilis'' are motile and are not producing our desired product - they swim freely in the medium. If we want to print a serif "I" shape of product, we shine light of the correct wavelength (red is used as an arbitrary example here) in the desired shape onto the plate. <br><br>Bacteria within this area will sense that light, and production of a clutch molecule (EpsE) will be triggered. This disengages the flagella from the motor quite quickly, rendering the ''subtilis'' stationary. Coupled with EpsE is a gene for expression of our desired product, so they will start producing it when in the area. We had considered also causing them to release a chemoattractant to bring in "reinforcements" and improve localisation, but this may be beyond the scope of our project. <br><br>Should any individuals stray from the correct area, the clutch should disengage and material synthesis should stop. Thus, we hope to build up material pixel by pixel in the defined area only - the basis of our 3D bioprinter.
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-[[Team:Imperial_College/Test_Page | '''''Test page and storage for random parts - Also see here for intro to editing the Imperial Wiki''''']]
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