Team:UC Berkeley Tools/Project/Tutorial

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Latest revision as of 02:40, 24 October 2008

Clotho Tutorial

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1) The Main Toolbar
This is the center of Clotho: the main toolbar. From here, you can open up any of the Clotho connections. The connections are separated into four categories: I/O, Tools, View, and Interfaces. "I/O" contains the connections that link Clotho to outside resources and databases. "Tools" contains the connections that provide functionality to Clotho. "Views" contains ways of viewing and manipulating information, including sequence data. "Interfaces" contains the connections that provide the user a way of interfacing with data, such as libraries of parts and feature annotations. From here, you can also access the Start, Help, and Options menus. For now, let's open up the options menu and select "Preferences"

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-{{ClothoTemplate}}
+[[Image:Clotho_Title_small.png|center]]
-<html>
+{{Template:ClothoMenu}}
-<p align="center"><img src="https://static.igem.org/mediawiki/2008/e/e5/ClothoLogo_Prof.png"  alt="Clotho" width="259" height="102" /></p>
-</html>
-Clotho is an open source BioCAD software platform with a unified set of tools for the management (via flexible databases), development (via algorithms and analysis), and deployment (via part packaging standards) of biological parts and systems.  Clotho achieves this by providing a core data structure that connects to external databases as well as plugin tools, including tools for sequence editing and annotation, design tools for constructing BioBrick composite parts, and an algorithm development manager. Additionally, we have developed the infrastructure for community developers to write custom plugins for Clotho.
+{{Template:ClothoTutorialVerticalMenu}}
+<!--YouTube-->
+<!---<html>
+   <div align="right" class="youtube">
+<object width="425" height="350"> <param name="movie" value="http://www.youtube.com/v/ktyt9mTOKIA"> </param> <embed src="http://www.youtube.com/v/ktyt9mTOKIA" type="application/x-shockwave-flash" width="425" height="350"> </embed> </object>
+</div>
+</html>--->
+  <div id="mainContent">
+    <p>&nbsp;</p>
+<p>'''<<< Previous''' | [[Team:UC_Berkeley_Tools/Project/Tutorial/Preferences|'''Next >>>''']]</p>
+    <p><strong>1) The  Main Toolbar</strong><br />
+      This is  the center of Clotho: the main toolbar.   From here, you can open up any of the Clotho connections.  The connections are separated into four  categories: I/O, Tools, View, and Interfaces.   &quot;I/O&quot; contains the connections that link Clotho to outside resources  and databases.  &quot;Tools&quot;  contains the connections that provide functionality to Clotho.  &quot;Views&quot; contains ways of viewing  and manipulating information, including sequence data.  &quot;Interfaces&quot; contains the  connections that provide the user a way of interfacing with data, such as  libraries of parts and feature annotations.   From here, you can also access the Start, Help, and Options menus.  For now, let's open up the options menu and  select &quot;Preferences&quot;</p>
+[[Image:Tut1.PNG|center]] <p>&nbsp;</p>
+  </div>
+'''<<< Previous''' | [[Team:UC_Berkeley_Tools/Project/Tutorial/Preferences|'''Next >>>''']]