Team:Warsaw/Calendar-Main/19 August 2008

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<h3>Tests for ampicillin resistance given by protein added to medium</h3><h4>Piotr</h4>
<h3>Tests for ampicillin resistance given by protein added to medium</h3><h4>Piotr</h4>
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<p>Inoculation of TOP10 carrying OmpA_A_alpha, OmpA_Adelta_alpha, OmpA_Adelta_omega, OmpA_A_omega, OmpA_omega_Adelta, OmpA_alpha, OmpA_omega and OmpA_omega_A_alpha to LB with inductor (0.25 mM IPTG) and kanamycin.</p>
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<p>Inoculation of TOP10 carrying <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-alpha>pACYC177+OmpA_A_alpha</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-deltaA-alpha>pACYC177+OmpA_&Delta;A_alpha</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BOmpA-deltaA-omega>pACYC177+OmpA_&Delta;A_omega</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-omega>pACYC177+OmpA_A_omega</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-deltaA>pACYC177+OmpA_omega_&Delta;A</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-alpha>pACYC177+OmpA_alpha</a>, <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega>pACYC177+OmpA_omega</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-omega-A-alpha>pACYC177+OmpA_omega_&Delta;A_alpha</a> to LB with inductor (0.25 mM IPTG) and kanamycin.</p>
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<h3>Cloning of protein A DNA to GeneArt plasmid</h3><h4>Antoni</h4>
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<h3>Cloning of alpha to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-omega>pACYC177+OmpA_A_omega</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-Z-omega>pACYC177+OmpA_Z_omega</a></h3><h4>Michał K.</h4>
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<p><ol>
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<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>  
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<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_purification_after_enzymatic_reaction">Clean-up</a> of overnight digest reaction. </li>
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<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation</a> with CIAP.</li>
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<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of digested vectors from <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/14_August_2008">14 August</a> and alpha DNA fragment.</li>
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<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
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<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
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</ol></p>
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<li>  <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Electroporation</a> of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a>  with ligations products.</li>
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<h3>Plasmid preparation for cloning of protein A DNA to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a></h3><h4>Antoni</h4>
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<li> Transformants plating on LB + kanamycin.</li></ol>
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<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmid</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
 
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<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
 
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<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>
 
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<h3>Cloning of alpha to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-omega>pACYC177+OmpA_A_omega</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-Z-omega>pACYC177+OmpA_Z_omega</a></h3><h4>Michał K.</h4>
 
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<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_purification_after_enzymatic_reaction">Clean-up</a> of overnight digest reaction. </li>
+
<h3>Cloning of protein A DNA to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a> plasmid</h3><h4>Antoni</h4>
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<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of digested vectors from <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/14_August_2008">14 August</a> and alpha DNA fragment.</li>
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<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Electroporation</a> of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a>  with ligations products.</li>
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<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmid</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
 +
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
 +
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1.</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>
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 +
<p class="hide"><br>
 +
<img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG">
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<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
 +
</p>
 +
 
 +
<h3>Cloning of protein A DNA to GeneArt plasmid</h3><h4>Antoni</h4>
 +
<p><ol>
 +
 
 +
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>
 +
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"dephosphorylation</a> with CIAP.</li>
 +
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1.</a>) of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
 +
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
 +
</ol></p>
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<li>  Transformants plating on LB + kanamycine.</li></ol>
 
<p><br>
<p><br>
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<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG"></a>
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<a name="fig1"><center><img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG"></a>
<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
</p>
</p>

Latest revision as of 13:13, 29 October 2008

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Tests for ampicillin resistance given by protein added to medium

Piotr

Inoculation of TOP10 carrying pACYC177+OmpA_A_alpha, pACYC177+OmpA_ΔA_alpha, pACYC177+OmpA_ΔA_omega, pACYC177+OmpA_A_omega, pACYC177+OmpA_omega_ΔA, pACYC177+OmpA_alpha, pACYC177+OmpA_omega and pACYC177+OmpA_omega_ΔA_alpha to LB with inductor (0.25 mM IPTG) and kanamycin.

Cloning of alpha to pACYC177+OmpA_A_omega and pACYC177+OmpA_Z_omega

Michał K.

  1. Clean-up of overnight digest reaction.
  2. Ligation of digested vectors from 14 August and alpha DNA fragment.
  3. Electroporation of E. coli TOP10 with ligations products.
  4. Transformants plating on LB + kanamycin.

Cloning of protein A DNA to pET15b+OmpA-alpha plasmid

Antoni

  1. Isolation of plasmid from cultures inocluated on previous day (pET15b+OmpA-alpha).
  2. Digest of pET15b+OmpA_alpha with NdeI and NotI (Orange buffer) and dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1.) and gel-out of 6300 bp band.


Fig. 1.Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix

Cloning of protein A DNA to GeneArt plasmid

Antoni

  1. Isolation of plasmids from bacterial cultures inoculated on previous day (pKS+A and pGeneart+Z).
  2. Digest of pKS+A and pGeneart+Z with SacI and NotI (BamHI buffer), pGeneart dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1.) of digested plasmids and gel-out of proper bands (470 bp for protein A lane and 2570 for pGeneart)
  4. Overnight ligation of pGeneart and A.


Fig. 1.Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix