Team:PennState/Project

From 2008.igem.org

(Difference between revisions)
 
(22 intermediate revisions not shown)
Line 1: Line 1:
<html>
<html>
<head>
<head>
-
<style>
+
<style type="text/css">
 +
 
 +
#globalWrapper {
 +
background-image: url("https://static.igem.org/mediawiki/2008/e/e4/Bglogo.png") !important;
 +
background-repeat: repeat;
 +
}
.ideasList{
.ideasList{
Line 37: Line 42:
}
}
-
.links td:hover {
+
.links td {
-
background-color: rgb(37,169,113);
+
padding: 0;
}
}
.links a{
.links a{
-
text-decoration:none;
+
display: block;
-
font-size:14px;
+
width: 100%;
-
color: #000;
+
height: 100%;
 +
margin: 0;
 +
text-align: center;
 +
text-decoration: none;
 +
font-size: 14px;
 +
color: #000;
}
}
Line 52: Line 62:
.links a:hover {
.links a:hover {
 +
background-color: rgb(37,169,113);
}
}
-
 
#header {
#header {
Line 88: Line 98:
  border-left: dashed #FFF 3px;
  border-left: dashed #FFF 3px;
  border-right: dashed #FFF 3px;
  border-right: dashed #FFF 3px;
-
  padding: 1em;
+
  padding: .8ex;
}
}
Line 95: Line 105:
  border-left: dashed #FFF 3px;
  border-left: dashed #FFF 3px;
  border-right: dashed #FFF 3px;
  border-right: dashed #FFF 3px;
-
  padding: 1em;
+
  padding: 1ex;
  margin-top: 0;
  margin-top: 0;
}
}
Line 105: Line 115:
#pagecontent p {
#pagecontent p {
  text-indent: 1.25em;
  text-indent: 1.25em;
 +
}
 +
 +
p.start:first-line {
 +
font-weight: bold;
 +
letter-spacing: 1.2;
}
}
</style>
</style>
Line 114: Line 129:
<!-- First table displays centered iGEM 2007 Logo -->   
<!-- First table displays centered iGEM 2007 Logo -->   
<div id="header">
<div id="header">
-
  <img src="https://static.igem.org/mediawiki/2008/d/df/Penn_state_igem_logo.JPG" alt="Penn State" />
+
  <img src="https://static.igem.org/mediawiki/2008/a/ad/Penn_state_igem_logo2.JPG" alt="Penn State" />
</div>
</div>
Line 136: Line 151:
-->
-->
<td valign="top" width="20%" id="projectnav">
<td valign="top" width="20%" id="projectnav">
-
  <h4 style="margin-top: 0;">Hormone Biosensors</h4>
+
  <h4>Diauxie Elimination</h4>
  <dl id="hbnav">
  <dl id="hbnav">
-
   <dd><a href="hbintro" title="Intro to Endocrine Disruption, pseudoestrogens, pthalates, nuclear hormone receptors, and our goals">Introduction</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/intro">Introduction</a></dd>
-
  <dt>Smart Fold</dt>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/TheSystem">The System</a></dd>
-
   <dd><a href="smartfold/overview">Overview</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/Strategies">Strategies</a></dd>
-
   <dd><a href="smartfold/parts" title="Parts submitted to the registry for this project">Parts</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/progress">Progress</a></dd>
-
   <dd><a href="smartfold/references">References</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/conclusions">Conclusions</a></dd>
-
  <dt>Nuclear Fusion</dt>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/parts" title="Parts submitted to the registry for diauxie">Parts</a></dd>
-
   <dd><a href="fusion/overview">Overview</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/diauxie/references">References</a></dd>
-
   <dd><a href="fusion/parts" title="Parts submitted to the registry for this project">Parts</a></dd>
+
-
   <dd><a href="fusion/references">References</a></dd>
+
  </dl>
  </dl>
-
  <h4>Diauxie Elimination</h4>
+
  <h4><acronym title="Nuclear Hormone Receptor">NHR Biosensors</acronym><br/></h4>
  <dl id="denav">
  <dl id="denav">
-
   <dd><a href="diauxie/intro">Introduction</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/NHR/introduction">NHR Introduction</a></dd>
-
   <dd><a href="diauxie/overview">Overview</a></dd>
+
 
-
   <dd><a href="diauxie/parts" title="Parts submitted to the registry for this project">Parts</a></dd>
+
   <dd><a href="https://2008.igem.org/Team:PennState/smartfold/overview">Phthalate Biosensor</a></dd>
-
  <dd><a href="diauxie/references">References</dd>
+
 
 +
   <dd><a href="https://2008.igem.org/Team:PennState/fusion/overview">BPA Biosensor</a></dd>
  </dl>
  </dl>
</td>
</td>
-
<td valign="top">
+
 
 +
<td valign="top" width="80%" id="pagecontent">
           <!-- ALL PAGE CONTENT GOES HERE: between the <td> and </td> tags! -->
           <!-- ALL PAGE CONTENT GOES HERE: between the <td> and </td> tags! -->
 +
<table>
<tr>
<tr>
-
     <td colspan="2" style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size: 14pt">Diauxie Elimination by Xylose Inducible Promoters </span>
+
     <td colspan="2" style="padding-top:30px; padding-right:30px" valign="top" width="45%">
 +
    <h4>Diauxie Elimination by Xylose Inducible Promoters</h4>
       <hr />
       <hr />
-
       <p><img src="picture here" alt="[img]" style="float:left; margin:5px;"/>Microorganisms typically preferentially utilize glucose over other sugar carbon sources such as xylose. This is largely regulated through control of gene expression based on the response of regulatory elements to sugars available to the cell. In <em>E. coli</em>, the xylose metabolism operon is controlled by both the xylose-inducible XylR activator protein and the cAMP receptor protein (CRP). In this project we attempt to eliminate glucose control over xylose-inducible gene expression in <em>E. coli</em> by altering the natural transcriptional control region of the xylose operon. Designs constructed and tested include scrambling the CRP binding site, increasing the strength of the xyl promoter, and overexpressing XylR. Xylose-inducible gene expression that functions independently of glucose regulation provides a useful approach to improving microbial utilization of biomass feedstocks containing mixtures of glucose and xylose.</p>
+
       <p class="start"><img src="https://static.igem.org/mediawiki/2008/c/c3/Diauxie_curves.JPG" alt="[Graph]" style="float:left; margin:5px;width: 120px;"/>Microorganisms typically preferentially utilize glucose over other sugar carbon sources such as xylose. This is largely regulated through control of gene expression based on the response of regulatory elements to sugars available to the cell. In <em>E. coli</em>, the xylose metabolism operon is controlled by both the xylose-inducible XylR activator protein and the cAMP receptor protein (CRP). In this project we attempt to eliminate glucose control over xylose-inducible gene expression in <em>E. coli</em> by altering the natural transcriptional control region of the xylose operon. Designs constructed and tested include scrambling the CRP binding site, increasing the strength of the xyl promoter, and overexpressing XylR. Xylose-inducible gene expression that functions independently of glucose regulation provides a useful approach to improving microbial utilization of biomass feedstocks containing mixtures of glucose and xylose.</p>
   </td>
   </td>
   </tr>   
   </tr>   
-
<table style="padding-left: 0">  <!-- change padding to re-indent this content segment -->
+
<!-- change padding to re-indent this content segment -->
-
        <tr><td style="padding-top:30px; padding-right:30px" valign="top" width="90%"><span style="font-size:14pt">Hormone Prescreening <em>E. coli</em></span>
+
    <tr><td style="padding-top:30px; padding-right:30px" valign="top" width="90%">
 +
    <h4>Hormone Prescreening with <em>E. coli</em></h4>
       <hr />
       <hr />
-
       <p>Two of our projects aim to construct biosensors which will ultimately serve as a water prescreening tool.  The focus of these biosensors will be to detect phthalate compounds utilizing the Peroxisome Proliferator Activated Receptor (PPAR) and detecting Bisphenol A (BPA) by the Estrogen Receptor (ER). Recent studies show phthalates cause negative health effects such as damage to the liver and kidneys and birth defects in rodents.  Phthalates are introduced into our environment by their use as plastisizers for materials ranging from polyvinyl chloride to nail polish to small toys.  BPA is also found in plastics but instead it is used for the synthesis of hard plastics.  Once BPA enters the human body it is confused for estrogen and parallels the effects of estrogen after attaching to the ligand binding region of the ER.  Analytical detection methods for water contamination are compound specific and very costly.  Having a simple and cheap tool to screen for phthalates or BPA as a general class of compounds would eliminate the cost and time involved in detection.</p>
+
       <p>Two of our projects aim to construct biosensors which will ultimately serve as a water prescreening tool.  The focus of these biosensors will be to detect phthalate compounds using the Peroxisome Proliferator Activated Receptor (PPAR) and detecting Bisphenol A (BPA) by the Estrogen Receptor (ER). The idea is explored in-depth in our <a href="https://2008.igem.org/Team:PennState/hbintro" title="">NHR Biosensors Introduction</a></p>
-
      <p> We are using two of the natural human nuclear hormone receptor proteins that recognize a large class of ligands, and attempting to express them heterologously in <em>E. coli</em>. The complexity of this mammalian protein makes it difficult to express it in a prokaryote. We have two different strategies to express and use these receptors to detect compounds in <em>E. coli</em>.  </p>
+
-
 
+
       <table> <!-- this table separates content into column-like quadrants -->
       <table> <!-- this table separates content into column-like quadrants -->
         <tr>
         <tr>
-
           <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size: 14pt">BPA Biosensor</span>
+
           <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><h4>"Smart Fold" Pthalate Biosensor</h4>
             <hr />
             <hr />
-
             <img src="http://upload.wikimedia.org/wikipedia/en/8/87/PPARg.png" alt="[img]" style="float:left; margin:5px;width: 30%"/>
+
             <img src="http://upload.wikimedia.org/wikipedia/en/8/87/PPARg.png" alt="[img]" style="float:left; margin:5px;width: 30%; border: solid 1px #ccc;"/>
-
             <p>This <em>BPA Biosensor</em> project uses altered growth conditions so that the entire <acronym title="Human Peroxisome Proliferator Activated Receptor subtype Alpha">hPPARα</acronym> protein is successfully expressed in <em>E. coli</em> and used to transcriptionally report for the presence of phthalates. Rather than changing the receptor and possibly losing its usefulness, we are chemically optimizing the cell environment. Check out our Overview to find out how.
+
             <p style="text-indent: 0">This <em>Phthalate Biosensor</em> project uses altered growth conditions so that the entire <acronym title="Human Peroxisome Proliferator Activated Receptor subtype Alpha">hPPARα</acronym> protein is successfully expressed in <em>E. coli</em> and used to transcriptionally report for the presence of phthalates in liquid solution. Rather than changing the receptor and possibly losing its usefulness, we are chemically optimizing the cell environment. Check out our Overview to find out how.
</p></td>
</p></td>
-
           <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><span style="font-size:18px">Nuclear Fusion</span>
+
           <td style="padding-top:30px; padding-right:30px" valign="top" width="45%"><h4>"Nuclear Fusion" BPA Biosensor</h4>
             <hr />
             <hr />
-
 
+
<img src="https://static.igem.org/mediawiki/2008/d/d9/PSU2008iGEM_BPAimage.png" alt="[img]" style="float:left; margin:5px;width: 150px; border: solid 1px #ccc;"/>
-
<img src="https://static.igem.org/mediawiki/2008/d/d9/PSU2008iGEM_BPAimage.png" alt="[img]" style="float:left; margin:5px;width: 30%;"/>
+
             <p style="text-indent: 0">The <em>Nuclear Fusion</em> project involves a plasmid construct very generously donated to our iGEM team from David W. Wood, Department of Chemical Engineering at Princeton University.  Research in their lab has constructed a biosensor containing just the ligand binding domain (LBD) of the estrogen receptor (ER). Our plan for this project is to work on the sensitivity of the biosensor in hopes of using this for water prescreens, similar to the <em>Smart Fold Reporter</em> project.  The sensitivity will be focused for BPA which has a very different conformation than the natural agonist of the ER system (estradiol).  This difference causes BPA to bind weakly but still disturbs normal ER function.</p><p>We intend to analyze the LBD of ER and perform directed evolution to increase BPA sensitivity.  During directed evolution, certain regions of the ER LBD would be targeted for random mutagenesis providing a library of mutants in the trillions.  The mutant library would be induced with BPA and the best growing colony would be selected, tested, and mutated for further sensitivity.</p>
-
             <p> The <em>Nuclear Fusion</em> project involves a plasmid construct very generously donated to our iGEM team from David W. Wood, Department of Chemical Engineering at Princeton University.  Research in their lab has constructed a biosensor containing just the ligand binding domain (LBD) of the estrogen receptor (ER). Our plan for this project is to work on the sensitivity of the biosensor in hopes of using this for water prescreens, similar to the <em>Smart Fold Reporter</em> project.  The sensitivity will be focused for BPA which has a very different conformation than the natural agonist of the ER system (estradiol).  This difference causes BPA to bind weakly but still disturbs normal ER function.</p><p>We intend to analyze the LBD of ER and perform directed evolution to increase BPA sensitivity.  During directed evolution, certain regions of the ER LBD would be targeted for random mutagenesis providing a library of mutants in the trillions.  The mutant library would be induced with BPA and the best growing colony would be selected, tested, and mutated for further sensitivity.</p>
+
</p></td>
</p></td>
-
        </tr>
+
</tr>
-
         
+
</table>         
</td>
</td>
-
</tr>
+
</tr>
</table>
</table>

Latest revision as of 01:32, 30 October 2008

Home The Team The Project Parts Notebook

Diauxie Elimination

Introduction
The System
Strategies
Progress
Conclusions
Parts
References

NHR Biosensors

NHR Introduction
Phthalate Biosensor
BPA Biosensor

Diauxie Elimination by Xylose Inducible Promoters

[Graph]Microorganisms typically preferentially utilize glucose over other sugar carbon sources such as xylose. This is largely regulated through control of gene expression based on the response of regulatory elements to sugars available to the cell. In E. coli, the xylose metabolism operon is controlled by both the xylose-inducible XylR activator protein and the cAMP receptor protein (CRP). In this project we attempt to eliminate glucose control over xylose-inducible gene expression in E. coli by altering the natural transcriptional control region of the xylose operon. Designs constructed and tested include scrambling the CRP binding site, increasing the strength of the xyl promoter, and overexpressing XylR. Xylose-inducible gene expression that functions independently of glucose regulation provides a useful approach to improving microbial utilization of biomass feedstocks containing mixtures of glucose and xylose.

Hormone Prescreening with E. coli

Two of our projects aim to construct biosensors which will ultimately serve as a water prescreening tool. The focus of these biosensors will be to detect phthalate compounds using the Peroxisome Proliferator Activated Receptor (PPAR) and detecting Bisphenol A (BPA) by the Estrogen Receptor (ER). The idea is explored in-depth in our NHR Biosensors Introduction

"Smart Fold" Pthalate Biosensor

[img]

This Phthalate Biosensor project uses altered growth conditions so that the entire hPPARα protein is successfully expressed in E. coli and used to transcriptionally report for the presence of phthalates in liquid solution. Rather than changing the receptor and possibly losing its usefulness, we are chemically optimizing the cell environment. Check out our Overview to find out how.

"Nuclear Fusion" BPA Biosensor

[img]

The Nuclear Fusion project involves a plasmid construct very generously donated to our iGEM team from David W. Wood, Department of Chemical Engineering at Princeton University. Research in their lab has constructed a biosensor containing just the ligand binding domain (LBD) of the estrogen receptor (ER). Our plan for this project is to work on the sensitivity of the biosensor in hopes of using this for water prescreens, similar to the Smart Fold Reporter project. The sensitivity will be focused for BPA which has a very different conformation than the natural agonist of the ER system (estradiol). This difference causes BPA to bind weakly but still disturbs normal ER function.

We intend to analyze the LBD of ER and perform directed evolution to increase BPA sensitivity. During directed evolution, certain regions of the ER LBD would be targeted for random mutagenesis providing a library of mutants in the trillions. The mutant library would be induced with BPA and the best growing colony would be selected, tested, and mutated for further sensitivity.

Retrieved from "http://2008.igem.org/Team:PennState/Project"