Team:Warsaw/Calendar-Main/19 August 2008

From 2008.igem.org

(Difference between revisions)
 
(7 intermediate revisions not shown)
Line 9: Line 9:
-
<h3>Cloning of protein A DNA to GeneArt plasmid</h3><h4>Antoni</h4>
+
<h3>Cloning of alpha to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-omega>pACYC177+OmpA_A_omega</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-Z-omega>pACYC177+OmpA_Z_omega</a></h3><h4>Michał K.</h4>
-
<p><ol>
+
-
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>  
+
<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_purification_after_enzymatic_reaction">Clean-up</a> of overnight digest reaction. </li>
-
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation</a> with CIAP.</li>
+
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of digested vectors from <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/14_August_2008">14 August</a> and alpha DNA fragment.</li>
-
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
+
-
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
+
-
</ol></p>
+
 +
<li>  <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Electroporation</a> of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a>  with ligations products.</li>
-
<h3>Plasmid preparation for cloning of protein A DNA to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a></h3><h4>Antoni</h4>
+
<li>  Transformants plating on LB + kanamycin.</li></ol>
 +
 
 +
 
 +
 
 +
 
 +
<h3>Cloning of protein A DNA to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a> plasmid</h3><h4>Antoni</h4>
<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmid</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmid</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
-
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>
+
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1.</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>
 +
<p class="hide"><br>
 +
<img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG">
 +
<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
 +
</p>
-
<h3>Cloning of alpha to <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-A-omega>pACYC177+OmpA_A_omega</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pACYC177%2BompA-Z-omega>pACYC177+OmpA_Z_omega</a></h3><h4>Michał K.</h4>
+
<h3>Cloning of protein A DNA to GeneArt plasmid</h3><h4>Antoni</h4>
 +
<p><ol>
-
<ol><li><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_purification_after_enzymatic_reaction">Clean-up</a> of overnight digest reaction. </li>
+
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>  
-
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">Ligation</a> of digested vectors from <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/14_August_2008">14 August</a> and alpha DNA fragment.</li>
+
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation</a> with CIAP.</li>
-
 
+
<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1.</a>) of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
-
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#electrotransform">Electroporation</a> of <i>E. coli</i> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#top10">TOP10</a> with ligations products.</li>
+
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
 +
</ol></p>
-
<li>  Transformants plating on LB + kanamycine.</li></ol>
 
<p><br>
<p><br>
-
<a name="fig1"><img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG"></a>
+
<a name="fig1"><center><img src="https://static.igem.org/mediawiki/2008/4/4b/PKS%2BApGApET%2Balfa.JPG"></a>
<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
<var><b>Fig. 1.</b>Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix</var>
</p>
</p>

Latest revision as of 13:13, 29 October 2008

Gallery Bricks Notebook Team Project Home


Previous day
return to main notebook page
Previous entry
next notebook entry

 



Tests for ampicillin resistance given by protein added to medium

Piotr

Inoculation of TOP10 carrying pACYC177+OmpA_A_alpha, pACYC177+OmpA_ΔA_alpha, pACYC177+OmpA_ΔA_omega, pACYC177+OmpA_A_omega, pACYC177+OmpA_omega_ΔA, pACYC177+OmpA_alpha, pACYC177+OmpA_omega and pACYC177+OmpA_omega_ΔA_alpha to LB with inductor (0.25 mM IPTG) and kanamycin.

Cloning of alpha to pACYC177+OmpA_A_omega and pACYC177+OmpA_Z_omega

Michał K.

  1. Clean-up of overnight digest reaction.
  2. Ligation of digested vectors from 14 August and alpha DNA fragment.
  3. Electroporation of E. coli TOP10 with ligations products.
  4. Transformants plating on LB + kanamycin.

Cloning of protein A DNA to pET15b+OmpA-alpha plasmid

Antoni

  1. Isolation of plasmid from cultures inocluated on previous day (pET15b+OmpA-alpha).
  2. Digest of pET15b+OmpA_alpha with NdeI and NotI (Orange buffer) and dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1.) and gel-out of 6300 bp band.


Fig. 1.Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix

Cloning of protein A DNA to GeneArt plasmid

Antoni

  1. Isolation of plasmids from bacterial cultures inoculated on previous day (pKS+A and pGeneart+Z).
  2. Digest of pKS+A and pGeneart+Z with SacI and NotI (BamHI buffer), pGeneart dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1.) of digested plasmids and gel-out of proper bands (470 bp for protein A lane and 2570 for pGeneart)
  4. Overnight ligation of pGeneart and A.


Fig. 1.Digest product - pGeneart+Z (lanes 1-3), pKS+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix