Team:Chiba/Sender experiments/Senders(XL10Gold) T9002(JW1908)

From 2008.igem.org

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(Reaction temparature:30°C)
(Sender culture:500μL,Receiver:500μL)
 
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__NOTOC__
__NOTOC__
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==Results==
 +
===Reaction temparature:37°C===
 +
====Sender culture:500μL,Receiver:500μL====
 +
[[Image:Chiba_communication_XL10Gol_37_RS1_01.gif‎|thumb|left|'''Fig.1'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37&deg;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
 +
[[Image:Chiba_talks_XL10G_37_RS1_02.gif‎|thumb|left|'''Fig.2'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37&deg;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
 +
[[Image:Chiba_talks_XL10G_37_RS1_03.gif‎|thumb|left|'''Fig.3'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37&deg;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
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<br clear="all">
 +
*Fig. 1
 +
*results
 +
**Cultures containing cells transformed with LuxI gene([http://partsregistry.org/Part:BBa_K084012 BBa_K084012])and cells transformed with RhlI gene([http://partsregistry.org/Part:BBa_K084008 BBa_K084008]) express gfp and fluorescence intensity was reached to 500.Cultures containing cells transformed with LasI gene([http://partsregistry.org/Part:BBa_K084007 BBa_K084007]) weakly expressed gfp,and fluorescence intensity was not reached to a significant level.
 +
*Discussion
 +
#Maximum fluorescence intensity was vary,however,time before gfp expression doesn't differ.
 +
#We concluded that LasI gene([http://partsregistry.org/Part:BBa_K084007 BBa_K084007]) was not work well at this condition.
-
==Results==
+
*Fig. 2
-
===Reaction temparature:37°C===
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*Results
-
*センダーの培養液:500μL、レシーバの培養液:500μL
+
Fluorescence intensity of the culture containing cells transformed with LuxI gene([http://partsregistry.org/Part:BBa_K084012 BBa_K084012]) was lower than that of the cultures containing the cells transformed with LVA LuxI-LVA gene([http://partsregistry.org/Part:BBa_K084014 BBa_K084014]).The difference of maximum fluorescence intesity between the two cultures was 200.
-
[[Image:Chiba_communication_XL10Gol_37_RS1_01.gif‎|thumb|left|Fig.  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,37°C,Receiver cells/Sender cells = 1.]]
+
*Discussion
 +
**The rate of AHL synthesis decreased by the degradation of autoinducer synthase,however,the length of time before gfp expression is same.
-
[[Image:Chiba_talks_XL10G_37_RS1_02.gif‎|thumb|left|Fig.  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,37°C,Receiver cells/Sender cells = 1.]]
 
-
[[Image:Chiba_talks_XL10G_37_RS1_03.gif‎|thumb|left|Fig.  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,37°C,Receiver cells/Sender cells = 1.]]
+
*Fig. 3
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<br clear="all">
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*Results
 +
Cultures containing cells transformed with RhlI gene([http://partsregistry.org/Part:BBa_K084008 BBa_K084008]) and RhlI+LVA([http://partsregistry.org/Part:BBa_K084009 BBa_K084009]) draw the same transfer curve.
 +
*Discussion
 +
**We concluded that there was no effect of LVA-tag on time before gfp expression. 
-
*左
 
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**結果
 
-
***LuxI([http://partsregistry.org/Part:BBa_K084012 BBa_K084012]),RhlI([http://partsregistry.org/Part:BBa_K084008 BBa_K084008])は活性。蛍光強度は500に達した。LasI(BBa_K084007)は目標としている蛍光強度200に届かなかった。
 
-
**考察
 
-
***この条件においてLasI([http://partsregistry.org/Part:BBa_K084007 BBa_K084007])は活性ではないと考えた。
 
-
*中
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<br clear=all>
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**結果
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[[Image:Chiba_talks_XL10Gold_37_RS1_0917_01.gif|thumb|left|'''Fig.4'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
-
***LuxI([http://partsregistry.org/Part:BBa_K084012 BBa_K084012])とタグ付きのLuxI+LVA([http://partsregistry.org/Part:BBa_K084014 BBa_K084014])の8h後の蛍光強度の差は200であった。
+
[[Image:Chiba_talks_XL10Gold_37_RS1_0917_02.gif|thumb|left|'''Fig.5'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
-
***蛍光強度の差はあるが、あまり時間差は見られなかった。
+
-
**考察
+
-
***タグが付くことで蛍光の発現抑制は起きているが、この条件において時差の効果はあまりないようである。
+
-
*右
 
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**結果
 
-
***RhlI([http://partsregistry.org/Part:BBa_K084008 BBa_K084008])とタグ付きRhlI+LVA([http://partsregistry.org/Part:BBa_K084009 BBa_K084009])は全く同じ蛍光強度の上がり方で最終的な値までほぼ等しかった。
 
-
**考察
 
-
***LuxIの時とくらべてあまりにもタグの効果が見られないため、タグ自体が機能しているのか疑問である。
 
-
***タグ自体が機能していないのでないならば、この条件におけるRhlIのタグ効果はないと考えられる。
 
 +
<br clear=all>
 +
 +
====Sender culture:100&mu;L,Receiver:1000&mu;L====
 +
[[Image:Chiba_talks_XL10Gold_37_RS1_01.gif|thumb|left|'''Fig. 6'''  
 +
<br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37&deg;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
 +
<br clear=all>
-
--[[User:Yoshimi|Yoshimi]] 18:55, 29 October 2008 (UTC)
+
====Sender culture:10&mu;L,Receiver:1000&mu;L====
===Reaction temparature:30°C===
===Reaction temparature:30°C===
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*センダーの培養液:500μL、レシーバの培養液:500μL
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*Sender culture:500&mu;L, Receiver culture:500&mu;L
-
[[Image:Chiba_talks_XL10G_30-1_RS1_01.gif‎‎|thumb|left|Fig.  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C,Receiver cells/Sender cells = 1.]]
+
[[Image:Chiba_talks_XL10G_30-1_RS1_01.gif‎‎|thumb|left|'''Fig.7'''  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
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[[Image:Chiba_talks_XL10G_30-1_RS1_02.gif‎‎‎|thumb|left|Fig.  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C,Receiver cells/Sender cells = 1.]]
+
[[Image:Chiba_talks_XL10G_30-1_RS1_02.gif‎‎‎|thumb|left|'''Fig.8'''  <br>E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
<br clear="all">
<br clear="all">
-
*
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*Fig. 7
-
**結果 
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*Result  
-
***蛍光強度はRhl,LuxI+LVA,LasIの順に高かった。
+
#The highest maximum fluorescence intensity was caused by RhlI gene,followed by LuxI(with LVA) and LasI gene.
-
  LuxI,RhlIとLasIは蛍光強度200に達するまでの時間差は約2時間だった
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#Fluorescence intensity of the two culture containing cells transformed with LuxI gene and RhlI gene amount to 200 for 2 hour as fast as  LasI gene.
-
**考察
+
*Discussion
-
***30&deg;CではRhlIの活性のほうLuxIが高い。もしくは、LVAの効果が出ている。その場合、右のグラフを
+
#Maximum fluorescence intensity caused by RhlI gene was higher than that caused by LuxI gene.There are two reasons:
-
   のLVA自体に問題があると考えられる。
+
#RhlI was more active at this experimental condition.
 +
#LuxI was well degraded by protease.
 +
#We concluded that LVA-tag effective in this condition.
-
*
+
*Fig. 8
-
**結果
+
*Result
-
***RhlI+LVAとRhlIでは値はほぼ同じだった
+
**Comparing RhlI with  Rhl+LVAtag, fluoroscence intensity were almost same.
-
**考察
+
*Discussion
-
*** LVAが働いていないか、働いていたとしてもこの条件だとAHLの合成速度のほうが
+
**In this condition, production efficiency of LuxI protein higher than of LVAtag.
-
  かなり大きいと考えられる
+
-
===Reaction temparature:25°C===
+
===Reaction temparature:25&deg;C===
-
====センダーの培養液:500μL、レシーバの培養液:500μL====
+
====Sender culture:500μL,Receiver culture:500μL====
-
[[Image:Chiba_talks_XL10Gold_25_RS1_01.gif|thumb|left|Fig.<br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25°C,Receiver cells/Sender cells = 1.]]
+
[[Image:Chiba_talks_XL10Gold_25_RS1_01.gif|thumb|left|'''Fig.9'''  <br>E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25&deg;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
-
[[Image:Chiba_talks_XL10Gold_25_RS1_02.gif|thumb|left|Fig.<br> E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25°C,Receiver cells/Sender cells = 1.]]
+
[[Image:Chiba_talks_XL10Gold_25_RS1_02.gif|thumb|left|'''Fig.10''' <br> E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25&ded;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.]]
<br clear=all>
<br clear=all>
-
Left:
+
*Fig.9
-
#蛍光強度が、30&deg;C,37&deg;Cに比べて極端に低く,Sendersの培養液を添加しなかった反応液と差がほとんどなかった.LuxI,LasI,RhlI,LuxR,GFPすべての発現量が減っていたためと考えた.
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*results
-
#LuxI,RhlIの培養液を,混ぜた反応液に比べて,LasIの培養液を混ぜた反応液は,最大蛍光強度が小さかった(約1/2).
+
#The value of fluoroscence intensity by LuxI, RhlI, LasI gene at 25&deg;c  were almost the same as negative control at 30 and 37&deg;c.  
-
Right:
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#The last value of fluoroscence intensity by LasI gene was a half of LuxI and RhlI.
-
#RhlIにLVAtagのついているものは,LVAtagのついていないものに比べて最大蛍光強度が小さかった.
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*Discussion
 +
#Low temperature of 25&deg;c caused decrease of production efficiency of AHL synthase.
 +
#Static culture keep sender and receiver from shaking, in the end , expression of GFP decreased.
-
絞殺:
+
*Fig.10
-
25&deg;CにおいてはLuxI,LasI,RhlIのいずれも活性が低い。
+
*Result
-
AHLの合成量が減少すればLVAtagの効果がみられる。
+
**The fluoroscence intensity by RhlI with LVAtag is less than RhlI without LVAtag.
 +
*Discussion
 +
**LVAtag is effective in this condition.
<br clear=all>
<br clear=all>
[[Team:Chiba/Project/Experiments:Sender_Crosstalk||Back to Sender experiment and result]]
[[Team:Chiba/Project/Experiments:Sender_Crosstalk||Back to Sender experiment and result]]

Latest revision as of 09:47, 30 October 2008

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Home The Team The Project Parts Submitted to the Registry Reference Notebook Acknowledgements


Results

Reaction temparature:37°C

Sender culture:500μL,Receiver:500μL

Fig.1  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.
Fig.2  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.
Fig.3  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.


  • Fig. 1
  • results
    • Cultures containing cells transformed with LuxI gene([http://partsregistry.org/Part:BBa_K084012 BBa_K084012])and cells transformed with RhlI gene([http://partsregistry.org/Part:BBa_K084008 BBa_K084008]) express gfp and fluorescence intensity was reached to 500.Cultures containing cells transformed with LasI gene([http://partsregistry.org/Part:BBa_K084007 BBa_K084007]) weakly expressed gfp,and fluorescence intensity was not reached to a significant level.
  • Discussion
  1. Maximum fluorescence intensity was vary,however,time before gfp expression doesn't differ.
  2. We concluded that LasI gene([http://partsregistry.org/Part:BBa_K084007 BBa_K084007]) was not work well at this condition.
  • Fig. 2
  • Results

Fluorescence intensity of the culture containing cells transformed with LuxI gene([http://partsregistry.org/Part:BBa_K084012 BBa_K084012]) was lower than that of the cultures containing the cells transformed with LVA LuxI-LVA gene([http://partsregistry.org/Part:BBa_K084014 BBa_K084014]).The difference of maximum fluorescence intesity between the two cultures was 200.

  • Discussion
    • The rate of AHL synthesis decreased by the degradation of autoinducer synthase,however,the length of time before gfp expression is same.


  • Fig. 3
  • Results

Cultures containing cells transformed with RhlI gene([http://partsregistry.org/Part:BBa_K084008 BBa_K084008]) and RhlI+LVA([http://partsregistry.org/Part:BBa_K084009 BBa_K084009]) draw the same transfer curve.

  • Discussion
    • We concluded that there was no effect of LVA-tag on time before gfp expression.



Fig.4  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.
Fig.5  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.



Sender culture:100μL,Receiver:1000μL

Fig. 6  
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,37°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.


Sender culture:10μL,Receiver:1000μL

Reaction temparature:30°C

  • Sender culture:500μL, Receiver culture:500μL
Fig.7  
E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.
Fig.8  
E.coli strain,BBa_K084007:XL10Gold,BBa_T9002:JW1908,30°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.


  • Fig. 7
  • Result  
  1. The highest maximum fluorescence intensity was caused by RhlI gene,followed by LuxI(with LVA) and LasI gene.
  2. Fluorescence intensity of the two culture containing cells transformed with LuxI gene and RhlI gene amount to 200 for 2 hour as fast as LasI gene.
  • Discussion
  1. Maximum fluorescence intensity caused by RhlI gene was higher than that caused by LuxI gene.There are two reasons:
  2. RhlI was more active at this experimental condition.
  3. LuxI was well degraded by protease.
  4. We concluded that LVA-tag effective in this condition.


  • Fig. 8
  • Result
    • Comparing RhlI with Rhl+LVAtag, fluoroscence intensity were almost same.
  • Discussion
    • In this condition, production efficiency of LuxI protein higher than of LVAtag.

Reaction temparature:25°C

Sender culture:500μL,Receiver culture:500μL

Fig.9
E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25°C.All measurements are averages from three replicate cultures with error bars representing standard deviations.
Fig.10
 E.coli strain,Senders:XL10Gold,BBa_T9002:JW1908,25&ded;C.All measurements are averages from three replicate cultures with error bars representing standard deviations.


  • Fig.9
  • results
  1. The value of fluoroscence intensity by LuxI, RhlI, LasI gene at 25°c were almost the same as negative control at 30 and 37°c.
  2. The last value of fluoroscence intensity by LasI gene was a half of LuxI and RhlI.
  • Discussion
  1. Low temperature of 25°c caused decrease of production efficiency of AHL synthase.
  2. Static culture keep sender and receiver from shaking, in the end , expression of GFP decreased.
  • Fig.10
  • Result
    • The fluoroscence intensity by RhlI with LVAtag is less than RhlI without LVAtag.
  • Discussion
    • LVAtag is effective in this condition.


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