Team:Paris/Notebook/Oligo
From 2008.igem.org
(Difference between revisions)
Line 15: | Line 15: | ||
|width=45%| Comments | |width=45%| Comments | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" |O100 |
| FlgA-F | | FlgA-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGAGCATATCTCCTCCGCAGGTATCAAAAT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGAGCATATCTCCTCCGCAGGTATCAAAAT | ||
Line 22: | Line 22: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O101 |
| FlgA-R | | FlgA-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTAACAGTATCGCGATGATCGCCACGCTACGT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTAACAGTATCGCGATGATCGCCACGCTACGT | ||
Line 29: | Line 29: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O102 |
| FlgB-F | | FlgB-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGACAGTATCGCGATGATCGCCACGCTACG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGACAGTATCGCGATGATCGCCACGCTACG | ||
Line 36: | Line 36: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O103 |
| FlgB-R | | FlgB-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTAAGCATATCTCCTCCGCAGGTATCAAAATT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTAAGCATATCTCCTCCGCAGGTATCAAAATT | ||
Line 43: | Line 43: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O104 |
| FlgK-F | | FlgK-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCAGCAGATGAAATCGATAAGCGACAAGG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCAGCAGATGAAATCGATAAGCGACAAGG | ||
Line 50: | Line 50: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O105 |
| FlgK-R | | FlgK-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTAAACGCCGCCTGGGCCGCGTTCAGTCCGCT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTAAACGCCGCCTGGGCCGCGTTCAGTCCGCT | ||
Line 57: | Line 57: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O106 |
| FlgM-F | | FlgM-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGAGCGGCGTTGTTGATGCAGATGGGAATA | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGAGCGGCGTTGTTGATGCAGATGGGAATA | ||
Line 64: | Line 64: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O107 |
| FlgM-R | | FlgM-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACGAAGTGCGATCAATACTCATGGTTTATT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACGAAGTGCGATCAATACTCATGGTTTATT | ||
Line 71: | Line 71: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O108 |
| FlhB-F | | FlhB-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCACGTCATATCAGGCGGTCTGATAAGG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCACGTCATATCAGGCGGTCTGATAAGG | ||
Line 78: | Line 78: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O109 |
| FlhB-R | | FlhB-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTAGTTTTGTCGTCGCTCTCGTCAGACACGTC | | GTTTCTTCCTGCAGCGGCCGCTACTAGTAGTTTTGTCGTCGCTCTCGTCAGACACGTC | ||
Line 85: | Line 85: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O110 |
| FlhDC-Uri-F | | FlhDC-Uri-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGTTGTATGTGCGTGTAGTGACGAGTACAG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGTTGTATGTGCGTGTAGTGACGAGTACAG | ||
Line 92: | Line 92: | ||
|Don't amplify the both OmpR binding site | |Don't amplify the both OmpR binding site | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O111 |
| FlhDC-Total-F | | FlhDC-Total-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGTCATTTTTGCTTGCTAGCGTACGGAAAA | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGTCATTTTTGCTTGCTAGCGTACGGAAAA | ||
Line 99: | Line 99: | ||
|Amplify the both OmpR binding site | |Amplify the both OmpR binding site | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O112 |
| FlhDC(rbs)-R | | FlhDC(rbs)-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTATCCCACCCAGAATAACCAACTTTAT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTATCCCACCCAGAATAACCAACTTTAT | ||
Line 106: | Line 106: | ||
|Amplify the natural rbs of FlhD | |Amplify the natural rbs of FlhD | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O113 |
| FlhDC(nu)-R | | FlhDC(nu)-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACAGAATAACCAACTTTATTTTTATG | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACAGAATAACCAACTTTATTTTTATG | ||
Line 113: | Line 113: | ||
|Don't amplify the natural rbs of FlhD (only promoter) | |Don't amplify the natural rbs of FlhD (only promoter) | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O114 |
| FliA-PCR1-F | | FliA-PCR1-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCTGATTAACTGAGACTGACGGCAACGC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCTGATTAACTGAGACTGACGGCAACGC | ||
Line 120: | Line 120: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O115 |
| FliA-PCR1-R | | FliA-PCR1-R | ||
| CAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCCGCAGGGTTTTTAATCG | | CAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCCGCAGGGTTTTTAATCG | ||
Line 127: | Line 127: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O116 |
| FliA-PCR2-F | | FliA-PCR2-F | ||
| GAAACGGATAATCATGCCGATAACTCATATAACGCAGGGCTG | | GAAACGGATAATCATGCCGATAACTCATATAACGCAGGGCTG | ||
Line 134: | Line 134: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O117 |
| FliA-PCR2-R | | FliA-PCR2-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACCATTACACCTTCAGCGGTATAGAGTGAACTCACGATAAA | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACCATTACACCTTCAGCGGTATAGAGTGAACTCACGATAAA | ||
Line 141: | Line 141: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O118 |
| FliC-F | | FliC-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCAGCGATGAAATACTTGCCATGCGATT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCCAGCGATGAAATACTTGCCATGCGATT | ||
Line 148: | Line 148: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O119 |
| FliC-R | | FliC-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACAGCGAGAGGCTGTTGGTATTAATGACTT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACAGCGAGAGGCTGTTGGTATTAATGACTT | ||
Line 155: | Line 155: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O120 |
| FliE-F | | FliE-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGGTCGCATTCATCGCGCACCTCGTGGCTG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGGTCGCATTCATCGCGCACCTCGTGGCTG | ||
Line 162: | Line 162: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O121 |
| FliE-R | | FliE-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACTGGCTGATAACCCCTTCAATCCCCTGTA | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACTGGCTGATAACCCCTTCAATCCCCTGTA | ||
Line 169: | Line 169: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O122 |
| FliF-F | | FliF-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCTGGCTGATAACCCCTTCAATCCCCTGT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCTGGCTGATAACCCCTTCAATCCCCTGT | ||
Line 176: | Line 176: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O123 |
| FliF-R | | FliF-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCTGGCTGATAACCCCTTCAATCCCCTGT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCTGGCTGATAACCCCTTCAATCCCCTGT | ||
Line 183: | Line 183: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O124 |
| FliL-F | | FliL-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCAGCGAGAGGCTGTTGGTATTAATGACT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGAGCAGCGAGAGGCTGTTGGTATTAATGACT | ||
Line 190: | Line 190: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O125 |
| FliL-R | | FliL-R | ||
| GTTTCTTCCTGCAGCGGCCGCTACTAGTACCAGCGATGAAATACTTGCCATGCGATTT | | GTTTCTTCCTGCAGCGGCCGCTACTAGTACCAGCGATGAAATACTTGCCATGCGATTT | ||
Line 197: | Line 197: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O126 |
| Gene-EnvZ-F | | Gene-EnvZ-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGGCGATTGCGCTTCTCGCCAC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGGCGATTGCGCTTCTCGCCAC | ||
Line 204: | Line 204: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O127 |
| Gene-EnvZ-R | | Gene-EnvZ-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTACCCTTCTTTTGTCGTGCCCTGCGCC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTACCCTTCTTTTGTCGTGCCCTGCGCC | ||
Line 211: | Line 211: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O128 |
| Gene-FlgM-F | | Gene-FlgM-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGTATTGATCGCACTTCGCCTC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGTATTGATCGCACTTCGCCTC | ||
Line 218: | Line 218: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O129 |
| Gene-FlgM-R | | Gene-FlgM-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAGTTACTCTGCAAGTCTTGCTGCGCT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAGTTACTCTGCAAGTCTTGCTGCGCT | ||
Line 225: | Line 225: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O130 |
| Gene-FlhC-F | | Gene-FlhC-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGTGAAAAAAGCATTGTTCAGG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAGTGAAAAAAGCATTGTTCAGG | ||
Line 232: | Line 232: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O131 |
| Gene-FlhC-R | | Gene-FlhC-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAAACAGCCTGTACTCTCTGTTCATCC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAAACAGCCTGTACTCTCTGTTCATCC | ||
Line 239: | Line 239: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O132 |
| Gene-FlhD-F | | Gene-FlhD-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCATACCTCCGAGTTGCTGAAAC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCATACCTCCGAGTTGCTGAAAC | ||
Line 246: | Line 246: | ||
|Don't amplify the natural rbs of FlhD | |Don't amplify the natural rbs of FlhD | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O133 |
| Gene-FlhD-R | | Gene-FlhD-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAGGCCCTTTTCTTGCGCAGCGCTTCT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTAGGCCCTTTTCTTGCGCAGCGCTTCT | ||
Line 253: | Line 253: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O134 |
| Gene-FlhDCrbs-F | | Gene-FlhDCrbs-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGACCGCATAAAAATAAAGTTGGTTAT | | GTTTCTTCGAATTCGCGGCCGCTTCTAGACCGCATAAAAATAAAGTTGGTTAT | ||
Line 260: | Line 260: | ||
|Amplify the natural rbs of FlhD so that we have FlhD and FlhC with both their natural rbs | |Amplify the natural rbs of FlhD so that we have FlhD and FlhC with both their natural rbs | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O135 |
| Gene-FliA-F | | Gene-FliA-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAATTCACTCTATACCGCTGAAG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGAATTCACTCTATACCGCTGAAG | ||
Line 267: | Line 267: | ||
|Don't Amplify the natural rbs of FliA | |Don't Amplify the natural rbs of FliA | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O136 |
| Gene-FliA-R | | Gene-FliA-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTATAACTTACCCAGTTTAGTGCGTAAC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTATAACTTACCCAGTTTAGTGCGTAAC | ||
Line 275: | Line 275: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O137 |
| Gene-FliArbs-F | | Gene-FliArbs-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTAATCATGCCGATAACTCATATAAC | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTAATCATGCCGATAACTCATATAAC | ||
Line 282: | Line 282: | ||
|Amplify the natural rbs of FliA | |Amplify the natural rbs of FliA | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O138 |
| Gene-OmpR-F | | Gene-OmpR-F | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCAAGAGAACTACAAGATTCTGG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGATGCAAGAGAACTACAAGATTCTGG | ||
Line 289: | Line 289: | ||
| | | | ||
|- style="background: #cccccc;" | |- style="background: #cccccc;" | ||
- | | style="background: # | + | | style="background: #D4E2EF;" | O139 |
| Gene-OmpR-R | | Gene-OmpR-R | ||
| GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTATGCTTTAGAGCCGTCCGGTACAAAG | | GTTTCTTCGAATTCGCGGCCGCTTCTAGTTATTATGCTTTAGAGCCGTCCGGTACAAAG |
Revision as of 14:38, 30 July 2008
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