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Template:Team:UC Berkeley/Notebook/SC Asequencing
From 2008.igem.org
(Difference between revisions)
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| SC58 || 8/14/2008 || sca47 || Clone #1 || ca998 || short, but perfect || [[sca47-1]] | | SC58 || 8/14/2008 || sca47 || Clone #1 || ca998 || short, but perfect || [[sca47-1]] | ||
|- | |- | ||
| - | | SC59 || | + | | SC59 || 8/15/2008 || sca42 || Clone #7 || g00101 || short, missing phoA || [[sca42-7]] |
|- | |- | ||
| - | | SC60 || | + | | SC60 || 8/15/2008 || sca42 || Clone #8 || g00101 || short, perfect || [[sca42-8]] |
|- | |- | ||
| - | | SC61 || | + | | SC61 || 8/15/2008 || sca42 || Clone #12 || g00101 || short, perfect || [[sca42-12]] |
|- | |- | ||
| Read || Date || Description || Clone # || oligo || result || file | | Read || Date || Description || Clone # || oligo || result || file | ||
Revision as of 20:09, 15 August 2008
| Read | Date | sca # | Clone # | Oligo | Result | File |
| CC09 | 7/18/2008 | SCA15(trial 1) | Clone #1 | ca998/g00101 | Bad read | SCA15 |
| CC10 | 7/18/2008 | SCA17(trial 1) | Clone #2 | ca998/g00101 | Bad read | SCA17 |
| CC11 | 7/22/2008 | SCA18(trial 1) | Clone #4 | ca998 | Low signal | SCA18 |
| CC12 | 7/22/2008 | SCA19(trial 1) | Clone #1 | ca998 | Low signal | SCA19 |
| CC13 | 7/22/2008 | SCA18(trial 1) | Clone #4 | ca998 | Low signal | SCA18-2 |
| CC14 | 7/22/2008 | SCA19(trial 1) | Clone #1 | ca998 | Low signal | SCA19-2 |
| SC16 | 7/22/2008 | SCA16 | Clone #3 | ca998 | Bad--mixed inserts | SCA16 |
| SC17 | 7/22/2008 | SCA20 | Clone #5 | ca998/G00101 | Bad--mixed inserts | SCA20 |
| SC18 | 7/22/2008 | SCA22-1 | Clone #1 | ca998 | Perfect | SCA22 |
| SC19 | 7/22/2008 | SCA23-3 | Clone #3 | ca998 | Perfect | SCA23 |
| SC20 | 7/22/2008 | SCA24-1 | Clone #1 | ca998 | Perfect | SCA24 |
| SC21 | 7/22/2008 | SCA25-1 | Clone #1 | ca998 | Perfect | SCA25 |
| SC22 | 7/23/2008 | sca3-2 (fr. SP) | Clone #2 | ca998 | Did not work | SCA3-SP2 |
| SC23 | 7/24/2008 | sca3-PR2 | Clone #2 | ca998 | mixed inserts | SCA3-PR2 |
| SC24 | 7/24/2008 | sca15-1 (trial 2) | Clone #1 | ca998/g00101 | ca998 weird;g00101 good | SCA15-1 |
| SC25 | 7/30/2008 | sca1 T | Clone # | ca998/g00101 | 2 pt mutations | SC25 |
| SC26 | 7/30/2008 | sca2 T | Clone # | ca998 | Bad Read | SC26 |
| SC27 | 7/30/2008 | sca3 T | Clone #1 | ca998 | Bad Read | SC27 |
| SC28 | 7/30/2008 | sca4 T | Clone # | ca998 | Perfect(missing EcoRI) | SC28 |
| SC29 | 7/30/2008 | sca6 T | Clone # | ca998 | Perfect | SC29 |
| SC30 | 7/30/2008 | sca7 T | Clone # | ca998 | Perfect | SC30 |
| SC31 | 7/30/2008 | sca8 T | Clone # | ca998/g00101 | Perfect | SC31 |
| SC32 | 7/30/2008 | sca9 T | Clone # | ca998/g00101 | random sequence | SC32 |
| SC33 | 7/30/2008 | sca14 T | Clone # | ca998 | Perfect | SC33 |
| CC15 | 7/29/2008 | sca5 (pBca1256) | Clone #1 | ca998 | Perfect | SCA5-1 |
| CC16 | 7/29/2008 | sca5 (pBca1256) | Clone #2 | ca998 | Perfect | SCA5-2 |
| CC17 | 7/29/2008 | sca11 (pBca1256) | Clone #1 | ca998 | Perfect | SCA11-1 |
| CC18 | 7/29/2008 | sca11 (pBca1256) | Clone #2 | ca998 | Perfect | SCA11-2 |
| CC19 | 8/1/2008 | sca5 T | Clone #2 | ca998 | Perfect. no Bam site | SCA5 T2 |
| CC20 | 8/1/2008 | sca11 T | Clone #1 | ca998 | Perfect | SCA11 T1 |
| CC21 (CC11) | 8/3/2008 | sca5 T {<HA!} | Clone #2 | G00101 | Perfect | sca5 T |
| CC22 (CC12) | 8/3/2008 | sca11 T {<HA>} | Clone #1 | G00101 | Perfect | sca11 T |
| SC42 | 8/4/2008 | sca2-1 | Clone #1 | g00101(try) | no part...wrong | sca2-1 |
| SC43 | Date | sca3-9 | Clone #9 | ca998(&RS) | Bad Read | file |
| SC44 | 8/5/2008 | sca23-4 | Clone #4 | ca998 | Perfect | sca23-4 |
| SC45 | 8//8/2008 | Stock amplif. fimH | 1 sample | ca998 | mixed inserts | Amplif. fimH |
| | Date | fimH | Clone # | oligo | result | file |
| SC47 | 8/13/2008 | sca40-1 | Clone #1 | g00101 | Perfect | sca40-1 |
| SC48 | 8/13/2008 | sca40-4 | Clone #4 | g00101 | mixed inserts | sca40-4 |
| SC49 | 8/13/2008 | sca41-4 | Clone #4 | g00101 | Perfect | sca41-4 |
| SC50 | 8/13/2008 | sca42-2 | Clone #2 | g00101 | short - partial perfect | sca42-2 |
| SC51 | 8/13/2008 | sca42-5 (maybe sca43-2)? | Clone #5 | g00101 | Perfect(but contains <FLAG!) | sca42-5 |
| SC52 | 8/13/2008 | sca43-4 | Clone #4 | g00101 | short - only b1006 present | sca43-4 |
| SC53 | 8/14/2008 | sca42-5 | Clone #5 | g00101 | mixed inserts | sca42-5 2nd try |
| SC54 | 8/14/2008 | sca43-2 | Clone #2 | g00101 | perfect | sca43-2 |
| SC55 | 8/14/2008 | sca44 | Clone #1 | ca998 | perfect | sca44-1 |
| SC56 | 8/14/2008 | sca45 | Clone #1 | ca998 | perfect | sca45-1 |
| SC57 | 8/14/2008 | sca46 | Clone #1 | ca998 | perfect | sca46-1 |
| SC58 | 8/14/2008 | sca47 | Clone #1 | ca998 | short, but perfect | sca47-1 |
| SC59 | 8/15/2008 | sca42 | Clone #7 | g00101 | short, missing phoA | sca42-7 |
| SC60 | 8/15/2008 | sca42 | Clone #8 | g00101 | short, perfect | sca42-8 |
| SC61 | 8/15/2008 | sca42 | Clone #12 | g00101 | short, perfect | sca42-12 |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
