Team:Warsaw/Calendar-Main/11 July 2008

From 2008.igem.org

(Difference between revisions)
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</p>
</p>
-
<p>'''Preparation of construct A-omega'''<br>
+
<p>'''Preparation of construct omega-A'''<br>
-
1. PCR A<br>
+
<br>
-
template DNA - pKS-A4 1ul
+
1. PCR A in 50 ul<br>
-
primer APNot - 2 ul
+
template DNA - pKS-A4 1ul<br>
-
primer ALhomo2 - 2 ul
+
primer APNot - 2 ul<br>
-
Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 ul
+
primer ALhomo2 - 2 ul<br>
-
dNTPs - 1 ul
+
Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 ul<br>
-
Pfu turbo - 0.5 ul
+
dNTPs - 1 ul <br>
-
H2o - 38.5 ul
+
Pfu turbo - 0.5 ul<br>
 +
H2o - 38.5 ul<br>
 +
<br>
 +
program:
 +
1. 95oC 3'<br>
 +
2. 95oC 30"<br>
 +
3.62oC 45"<br>
 +
4.72oC 45"<br>
 +
5.72oC 10'<br>
 +
6. keeping in 4oC<br>
 +
 
 +
 
 +
</p>
 +
 
 +
2. PCR omega in 50 ul<br>
 +
template DNA - pUC19 1ul<br>
 +
primer OmegaLS - 2 ul<br>
 +
primer AOmegaPli - 2 ul<br>
 +
Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 ul<br>
 +
dNTPs - 1 ul <br>
 +
Pfu turbo - 0.5 ul<br>
 +
H2o - 38.5 ul<br>
program:
program:
-
1. 95oC 3'
+
1. 95oC 3'<br>
-
2. 95oC 30"
+
2. 95oC 30"<br>
-
3.62oC 45"
+
3. 62oC 45"<br>
-
4.72oC 45"
+
4. 72oC 45"<br>
-
5.72oC 10'
+
5. 72oC 10'<br>
-
6. keeping in 4oC
+
6. keeping in 4oC<br>
 +
25 cycles
</p>
</p>
 +
3. gel electrophoresis<br>
 +
 +
4.reisolation from agarose gel<br>
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{{WarNotebookEnd}}
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Revision as of 16:02, 26 September 2008

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Preparation of constructs with OmpA protein fusions
1. Colony PCR on colonies from plates with transformations OmpA_alpha.
2. Confirmed transformant colonies inoculated to liquid LB with kanamycin.
Cloning of protein Z DNA to OmpA constructs
1. 2 colonies was inoculated to liquid LB broth with kanamycin

Preparation of construct omega-A

1. PCR A in 50 ul
template DNA - pKS-A4 1ul
primer APNot - 2 ul
primer ALhomo2 - 2 ul
Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 ul
dNTPs - 1 ul
Pfu turbo - 0.5 ul
H2o - 38.5 ul

program: 1. 95oC 3'
2. 95oC 30"
3.62oC 45"
4.72oC 45"
5.72oC 10'
6. keeping in 4oC

2. PCR omega in 50 ul
template DNA - pUC19 1ul
primer OmegaLS - 2 ul
primer AOmegaPli - 2 ul
Pfu polymerase buffer + Mg2+ (from Fermentas) - 5 ul
dNTPs - 1 ul
Pfu turbo - 0.5 ul
H2o - 38.5 ul

program: 1. 95oC 3'
2. 95oC 30"
3. 62oC 45"
4. 72oC 45"
5. 72oC 10'
6. keeping in 4oC
25 cycles </p>

3. gel electrophoresis

4.reisolation from agarose gel