Team:Warsaw/Calendar-Main/2 September 2008

From 2008.igem.org

(Difference between revisions)
Line 5: Line 5:
<h3>Purification of proteins:  A-alpha, Z-alpha and Z-omega<br>
<h3>Purification of proteins:  A-alpha, Z-alpha and Z-omega<br>
Piotr </h3>
Piotr </h3>
-
<p>A-alpha, Z-alpha and Z-omega from overnight culture were inoculated in fresh LB, cultured until OD=0,5 and then induced with different concentrations of IPTG in 22C and 37C. Samples were collected twice: after 3h and next day (samples were centrifuged and frozen)</p>
+
<p><ol><li>A-alpha, Z-alpha and Z-omega from overnight culture inoculated in fresh LB and cultured until OD=0,5</li>
 +
<li>Cultures induced with different concentrations of IPTG in 22C and 37C.</li>
 +
<li>Samples were collected twice: after 3h and next day (samples were centrifuged and frozen)</li></ol></p>
<h3>Mutagenesis of protein A<br>Paweł</h3>
<h3>Mutagenesis of protein A<br>Paweł</h3>
-
<p>Mutagenesis of protein A was performed using 2 pairs of primers: <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#ADelL+KpnI>ADelL+KpnI</a> and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#ADelP>ADelP</a> (deletion of aminoacids involved in interaction with protein Z) and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#AmutL+KpnI>AMutL+KpnI</a>  and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#AmutP>AMutP</a> (changing of few aminoacids involved in interaction with protein Z).</p><br>
+
<p>Mutagenesis of protein A was performed using 2 pairs of primers: <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#ADelL+KpnI>ADelL+KpnI</a> and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#ADelP>ADelP</a> (deletion of aminoacids involved in interaction with protein Z) and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#AmutL+KpnI>AMutL+KpnI</a>  and <a href=https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/primers#AmutP>AMutP</a> (changing of few aminoacids involved in interaction with protein Z).</p>
<p>Mutagenesis were performed on 3 vectors:  pACYClac+ompA-A-omega, pACYClac+ompa-A-alfa and pACYClac+ ompa-alfa-A.</p>
<p>Mutagenesis were performed on 3 vectors:  pACYClac+ompA-A-omega, pACYClac+ompa-A-alfa and pACYClac+ ompa-alfa-A.</p>
<p>Each mutagenesis were performed using each primer at final concentration 0,1 uM, dNTPs at final concentration 0,25 uM and Walk (Pwo) polymerase (shipped by <a href=http://aabiot.com/>A&A Biotechnology</a>), with 100 ng of DNA template. </p>
<p>Each mutagenesis were performed using each primer at final concentration 0,1 uM, dNTPs at final concentration 0,25 uM and Walk (Pwo) polymerase (shipped by <a href=http://aabiot.com/>A&A Biotechnology</a>), with 100 ng of DNA template. </p>

Revision as of 22:44, 5 October 2008

Gallery Bricks Notebook Team Project Home


Previous day
return to main notebook page
Previous entry
next notebook entry

 


Purification of proteins: A-alpha, Z-alpha and Z-omega
Piotr

  1. A-alpha, Z-alpha and Z-omega from overnight culture inoculated in fresh LB and cultured until OD=0,5
  2. Cultures induced with different concentrations of IPTG in 22C and 37C.
  3. Samples were collected twice: after 3h and next day (samples were centrifuged and frozen)

Mutagenesis of protein A
Paweł

Mutagenesis of protein A was performed using 2 pairs of primers: ADelL+KpnI and ADelP (deletion of aminoacids involved in interaction with protein Z) and AMutL+KpnI and AMutP (changing of few aminoacids involved in interaction with protein Z).

Mutagenesis were performed on 3 vectors: pACYClac+ompA-A-omega, pACYClac+ompa-A-alfa and pACYClac+ ompa-alfa-A.

Each mutagenesis were performed using each primer at final concentration 0,1 uM, dNTPs at final concentration 0,25 uM and Walk (Pwo) polymerase (shipped by A&A Biotechnology), with 100 ng of DNA template.


PCR program (15 cycles):

94C 5 min

94C 30 s
55C 30 s
72C 10 min

72C 8 min

4C pause