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Template:Team:UC Berkeley/Notebook/AL sequencing
From 2008.igem.org
(Difference between revisions)
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| AL127 || || || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL127 | AL127]] | | AL127 || || || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL127 | AL127]] | ||
|- | |- | ||
| - | | AL128 || 8-31-2008 || akl005-2 || Clone 2 | + | | AL128 || 8-31-2008 || akl005-2 || Clone #2 || Oligo ca998 and g00101|| || [[Team:UC Berkeley/Notebook/AL/AL128 | AL128]] |
|- | |- | ||
| - | | AL129 || 8-31-2008 || akl005-3 || Clone 3 | + | | AL129 || 8-31-2008 || akl005-3 || Clone #3 || Oligo ca998 and g00101|| || [[Team:UC Berkeley/Notebook/AL/AL129 | AL129]] |
|- | |- | ||
| AL130 || || || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL130 | AL130]] | | AL130 || || || || Oligo ca998 || || [[Team:UC Berkeley/Notebook/AL/AL130 | AL130]] | ||
|} | |} | ||
Revision as of 00:27, 12 October 2008
[http://andersonlab.qb3.berkeley.edu/SeqLogTemplate.xls Excel Template for Sequencing Logs]
| Read | Date | plasmid | Clone | Oligo | Result | File |
| AL001 | 6-16-2008 | pBca1256-K112300 | Clone #1 | Oligo ca998 | Perfect | AL001 |
| AL002 | 6-16-2008 | pBca1256-K112301 | Clone #1 | Oligo ca998 | Perfect | AL002 |
| AL003 | 6-16-2008 | pBca1256-K112302 | Clone #1 | Oligo ca998 | Perfect | AL003 |
| AL004 | 6-16-2008 | pBca1256-K112303 | Clone #1 | Oligo ca998 | Point Mutation | AL004 |
| AL005 | 6-16-2008 | pBca1256-K112304 | Clone #1 | Oligo ca998 | Perfect | AL005 |
| AL006 | 6-16-2008 | pBca1256-K112305 | Clone #1 | Oligo ca998 | Bad Read | AL006 |
| AL007 | 6-16-2008 | pBca1256-K112306 | Clone #1 | Oligo ca998 | Perfect | AL007 |
| AL008 | 6-16-2008 | pBca1256-K112307 | Clone #1 | Oligo ca998 | Point Mutation | AL008 |
| AL009 | 6-16-2008 | pBca1256-K112308 | Clone #1 | Oligo ca998 | Perfect | AL009 |
| AL010 | 6-16-2008 | pBca1256-K112309 | Clone #1 | Oligo ca998 | Perfect | AL010 |
| AL011 | 6-16-2008 | pBca1256-K112310 | Clone #1 | Oligo ca998 | Point Mutation | AL011 |
| AL012 | 6-16-2008 | pBca1256-K112311 | Clone #1 | Oligo ca998 | Bad Read | AL012 |
| AL013 | 6-16-2008 | pBca1256-K112312 | Clone #1 | Oligo ca998 | Perfect | AL013 |
| AL014 | 6-16-2008 | pBca1256-K112313 | Clone #1 | Oligo ca998 | Point Mutation | AL014 |
| AL015 | 6-16-2008 | pBca1256-K112314 | Clone #1 | Oligo ca998 | Other sequence | AL015 |
| AL016 | 6-16-2008 | pBca1256-K112315 | Clone #1 | Oligo ca998 | Perfect | AL016 |
| AL017 | 6-16-2008 | pBca1256-K112316 | Clone #1 | Oligo ca998 | Bad Read | AL017 |
| AL018 | 6-16-2008 | pBca1256-K112317 | Clone #1 | Oligo ca998 | Perfect | AL018 |
| AL019 | 6-16-2008 | pBca1256-K112318 | Clone #1 | Oligo ca998 | Perfect | AL019 |
| AL020 | 6-16-2008 | pBca1256-K112319 | Clone #1 | Oligo ca998 | Other Sequence | AL020 |
| AL021 | 6-16-2008 | pBca1256-K112320 | Clone #1 | Oligo ca998 | Short Read/Point Mutation | AL021 |
| AL022 | 6-18-2008 | pBca1256-K112303 | Clone #2 | Oligo ca998 | Perfect | AL022 |
| AL023 | 6-18-2008 | pBca1256-K112305 | Clone #2 | Oligo ca998 | Other sequence | AL023 |
| AL024 | 6-18-2008 | pBca1256-K112307 | Clone #2 | Oligo ca998 | Perfect | AL024 |
| AL025 | 6-18-2008 | pBca1256-K112310 | Clone #2 | Oligo ca998 | Other Sequence | AL025 |
| AL026 | 6-18-2008 | pBca1256-K112311 | Clone #2 | Oligo ca998 | Other Sequence | AL026 |
| AL027 | 6-18-2008 | pBca1256-K112313 | Clone #2 | Oligo ca998 | Other Sequence | AL027 |
| AL028 | 6-18-2008 | pBca1256-K112314 | Clone #2 | Oligo ca998 | Perfect | AL028 |
| AL029 | 6-18-2008 | pBca1256-K112316 | Clone #2 | Oligo ca998 | Other Sequence | AL029 |
| AL030 | 6-18-2008 | pBca1256-K112319 | Clone #2 | Oligo ca998 | Perfect | AL030 |
| AL031 | 6-18-2008 | pBca1256-K112320 | Clone #2 | Oligo ca998 | Perfect | AL031 |
| AL032 | 6-20-2008 | pBca1256-K112305 | Clone #3 | Oligo ca998 | Perfect | AL032 |
| AL033 | 6-20-2008 | pBca1256-K112310 | Clone #3 | Oligo ca998 | Perfect | AL033 |
| AL034 | 6-20-2008 | pBca1256-K112311 | Clone #3 | Oligo ca998 | Point Mutation and Deletion | AL034 |
| AL035 | 6-20-2008 | pBca1256-K112313 | Clone #3 | Oligo ca998 | Point Mutation | AL035 |
| AL036 | 6-20-2008 | pBca1256-K112316 | Clone #3 | Oligo ca998 | Other Sequence | AL036 |
| AL037 | 6-24-2008 | pBca1256-K112311 | Clone #4 | Oligo ca998 | Point Mutation | AL037 |
| AL038 | 6-24-2008 | pBca1256-K112313 | Clone #4 | Oligo ca998 | Perfect | AL038 |
| AL039 | 6-24-2008 | pBca1256-K112316 | Clone #4 | Oligo ca998 | Point mutation in EcoRI site | AL039 |
| AL040 | 6-24-2008 | pBca1256-K112319 | Clone #1 | Oligo ca998 | Perfect | AL040 |
| AL041 | 6-24-2008 | pBca1256-K112319 | Clone #2 | Oligo ca998 | Perfect | AL041 |
| AL042 | 6-26-2008 | pBca1256-K112311 | Clone #5 | Oligo ca998 | Deletion and point mutation | AL042 |
| AL043 | 6-26-2008 | pBca1256-K112311 | Clone #6 | Oligo ca998 | Deletion | AL043 |
| AL044 | 6-27-2008 | pBca1256-K112311 | Clone #7 | Oligo ca998 | Deletion | AL044 |
| AL045 | 6-29-2008 | pBca1256-K112311 | Clone #8 | Oligo ca998 | Perfect | AL045 |
| AL046 | 6-29-2008 | pBca1256-K112311 | Clone #9 | Oligo ca998 | Perfect | AL046 |
| AL047 | 6-29-2008 | pBca1256-K112311 | Clone #10 | Oligo ca998 | Did not work | AL047 |
| AL048 | 7-06-2008 | K112321 | Clone #1 | Oligo ca998 | Did not work | AL048 |
| AL049 | 7-06-2008 | K112321 | Clone #2 | Oligo ca998 | Point Mutation in C-terminus | AL049 |
| AL050 | 7-06-2008 | K112322 | Clone #1 | Oligo ca998 | Perfect | AL050 |
| AL051 | 7-06-2008 | K112322 | Clone #2 | Oligo ca998 | Perfect | AL051 |
| AL052 | Jin's Sequence | Oligo ca998 | AL052 | |||
| AL053 | Jin's Sequence | Oligo ca998 | AL053 | |||
| AL054 | 7-12-2008 | K112323 | Clone #1 | Oligo ca998 | Some Deletions/Point Mutation Possibly from sequencing | AL054 |
| AL055 | 7-12-2008 | K112323 | Clone #2 | Oligo ca998 | Perfect | AL055 |
| AL056 | 7-22-2008 | K112319 | Clone #3 | Oligo ca998 | Turn out to be ftsAz | AL056 |
| AL057 | 7-19-2008 | akl004 | Clone #1 | Oligo ca998 | Lefty is a~pelB | AL057 |
| AL058 | 7-19-2008 | Clone #1 | Oligo ca998 and g00101 | Lefty is a~pelB | AL058 | |
| AL059 | 7-22-2008 | akl008 | Clone #1 | Oligo ca998 | no lefty part | AL059 |
| AL060 | 7-22-2008 | akl007 | Clone #1 | Oligo ca998 | wrong K112607 | AL060 |
| AL061 | 7-22-2008 | akl010 | Clone #1 | Oligo ca998 | wrong K112607 | AL061 |
| AL062 | 7-22-2008 | Bca1092 A/K | Clone #1 | Oligo ca998 | Perfect | AL062 |
| AL063 | 7-23-2008 | K112230 A/K | Clone #1 | Oligo ca998 | Sequence is a~pelB | AL063 |
| AL064 | 7-23-2008 | K112608 | Clone #1 | Oligo ca998 | Perfect (but not what we want) | AL064 |
| AL065 | 7-24-2008 | Bca1109 | Clone #1 | Oligo ca998 | Some Mutations but should still work | AL065 |
| AL066 | 7-24-2008 | pBCa1256-K112229 | Clone #1 | Oligo ca998 | Perfect | AL066 |
| AL067 | 7-25-2008 | akl005 | Clone #1 | Oligo ca998 | Multiple Templates | AL067 |
| AL068 | 7-24-2008 | akl009 | Clone #1 | Oligo ca998 | Wrong rbs_lamB> righty could be rbs pelB | AL068 |
| AL069 | 7-25-2008 | Bca1106-A K/C | Clone #1 | Oligo ca998 | Bad Read | AL069 |
| AL070 | 7-24-2008 | akl008 | Clone #2 | Oligo ca998 | {rbs_lamB>} wrong | AL070 |
| AL071 | 7-25-2008 | Bca1109 | Clone #1 | Oligo g00101 | Perfect | AL071 |
| AL072 | 7-25-2008 | pBca1256-K112319 | Clone #4 | Oligo ca998 | Perfect | AL072 |
| AL073 | 7-25-2008 | akl002 | Clone #1 | Oligo ca998 | Perfect | AL073 |
| AL074 | 7-26-2008 | akl005 | Clone #2 | Oligo ca998 and g00101 | Multiple Templates | AL074 |
| AL075 | 7-29-2008 | akl001 | Clone #1 | Oligo ca998 and g00101 | Perfect | AL075 |
| AL076 | 7-28-2008 | Oligo ca998 | AL076 | |||
| AL077 | Oligo ca998 | AL077 | ||||
| AL078 | Oligo ca998 | AL078 | ||||
| AL079 | Oligo ca998 | AL079 | ||||
| AL080 | Oligo ca998 | AL080 | ||||
| AL081 | Oligo ca998 | AL081 | ||||
| AL082 | Oligo ca998 | AL082 | ||||
| AL083 | Oligo ca998 | AL083 | ||||
| AL084 | Oligo ca998 | AL084 | ||||
| AL085 | Oligo ca998 | AL085 | ||||
| AL086 | Oligo ca998 | AL086 | ||||
| AL087 | Oligo ca998 | AL087 | ||||
| AL088 | Oligo ca998 | AL088 | ||||
| AL089 | Oligo ca998 | AL089 | ||||
| AL090 | Oligo ca998 | AL090 | ||||
| AL091 | Oligo ca998 | AL091 | ||||
| AL092 | Oligo ca998 | AL092 | ||||
| AL093 | Oligo ca998 | AL093 | ||||
| AL094 | Oligo ca998 | AL094 | ||||
| AL095 | Oligo ca998 | AL095 | ||||
| AL096 | Oligo ca998 | AL096 | ||||
| AL097 | Oligo ca998 | AL097 | ||||
| AL098 | Oligo ca998 | AL098 | ||||
| AL099 | Oligo ca998 | AL099 | ||||
| AL100 | Oligo ca998 | AL100 | ||||
| AL101 | Oligo ca998 | AL101 | ||||
| AL102 | Oligo ca998 | AL102 | ||||
| AL103 | Oligo ca998 | AL103 | ||||
| AL104 | Oligo ca998 | AL104 | ||||
| AL105 | Oligo ca998 | AL105 | ||||
| AL106 | Oligo ca998 | AL106 | ||||
| AL107 | Oligo ca998 | AL107 | ||||
| AL108 | Oligo ca998 | AL108 | ||||
| AL109 | Oligo ca998 | AL109 | ||||
| AL110 | Oligo ca998 | AL110 | ||||
| AL111 | Oligo ca998 | AL111 | ||||
| AL112 | Oligo ca998 | AL112 | ||||
| AL113 | Oligo ca998 | AL113 | ||||
| AL114 | Oligo ca998 | AL114 | ||||
| AL115 | Oligo ca998 | AL115 | ||||
| AL116 | Oligo ca998 | AL116 | ||||
| AL117 | Oligo ca998 | AL117 | ||||
| AL118 | Oligo ca998 | AL118 | ||||
| AL119 | Oligo ca998 | AL119 | ||||
| AL120 | Oligo ca998 | AL120 | ||||
| AL121 | Oligo ca998 | AL121 | ||||
| AL122 | Oligo ca998 | AL122 | ||||
| AL123 | Oligo ca998 | AL123 | ||||
| AL124 | Oligo ca998 | AL124 | ||||
| AL125 | Oligo ca998 | AL125 | ||||
| AL126 | Oligo ca998 | AL126 | ||||
| AL127 | Oligo ca998 | AL127 | ||||
| AL128 | 8-31-2008 | akl005-2 | Clone #2 | Oligo ca998 and g00101 | AL128 | |
| AL129 | 8-31-2008 | akl005-3 | Clone #3 | Oligo ca998 and g00101 | AL129 | |
| AL130 | Oligo ca998 | AL130 |
