"
Team:BCCS-Bristol/Modeling-Software
From 2008.igem.org
Tgorochowski (Talk | contribs) (→Reciever) |
Tgorochowski (Talk | contribs) (→Acknowledgements) |
||
| Line 32: | Line 32: | ||
=== Acknowledgements === | === Acknowledgements === | ||
| + | We would like to acknowledge the use of several export libraries provided by the following people. | ||
| - | * '''Werner Randelshofer''' ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class | + | * '''Werner Randelshofer''' ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class which allows for movies to be written to a file. |
| - | * '''David J. Eisenberg''' (david@catcode.com) - PNGEncoder.java class | + | * '''David J. Eisenberg''' (david@catcode.com) - PNGEncoder.java class that allows for a graphic context to be written to a file. |
== GRN Matlab Scripts == | == GRN Matlab Scripts == | ||
Revision as of 12:26, 29 October 2008
BSim
Pre-Compiled Versions
[http://2008sw.igem.org/bccs_bristol/bin/BSim.jar BSim.jar] (Compiled on Mac OS X 10.5.5 (Intel) using Java 1.5.0_16)
Source Code
[http://2008sw.igem.org/bccs_bristol/src/BSim_Source.zip BSim Source Code] (zip file)
User Guide
Acknowledgements
We would like to acknowledge the use of several export libraries provided by the following people.
- Werner Randelshofer ([http://www.randelshofer.ch http://www.randelshofer.ch]) - QuickTimeExportStream class which allows for movies to be written to a file.
- David J. Eisenberg (david@catcode.com) - PNGEncoder.java class that allows for a graphic context to be written to a file.
GRN Matlab Scripts
Sender
[http://2008sw.igem.org/bccs_bristol/src/GRN/sender.m Sender GRN] - Models the concentrations of mRNA and proteins for the sender part of the GRN.
[http://2008sw.igem.org/bccs_bristol/src/GRN/varyCpxR.m Vary CpxR concentration] - Shows levels of AHL outputted by sender when CpMax is varied.
Transport
[http://2008sw.igem.org/bccs_bristol/src/GRN/transport.m Transport] - Analyses how the concentration of a given chemical varies over time due to a diffusion process.
Reciever
[http://2008sw.igem.org/bccs_bristol/src/GRN/reciever.m Reciever GRN] - Models the concentrations of mRNA and proteins for the reciever part of the GRN.
[http://2008sw.igem.org/bccs_bristol/src/GRN/compareRecieverInput.m Vary AHL concentration] - Shows levels of mCherry outputted by reciever when levels of AHL are varied.
