Team:Groningen/references.html

From 2008.igem.org

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IL, 1966.</li>
IL, 1966.</li>
<li>S. Wolfram. Universality and complexity in cellular automata. Physica D 10:1-35, 1984.</li>
<li>S. Wolfram. Universality and complexity in cellular automata. Physica D 10:1-35, 1984.</li>
 +
 +
<li>S. Sen, C. Shaw, D.R. Chowdhuri, N. Ganguly, and P.P. Chaudhuri. Cellular Automata Based Cryptosystem
 +
(CAC), ICICS ‘02. Proceedings of the 4th International Conference on Information and Communications
 +
Security, 303--314. Springer-Verlag, London, UK 2002.</li>
 +
<li>G.B. Ermentrout, and L. Edelstein-Keshet. Cellular Automata Approaches to Biological Modeling. Journal
 +
of Theoretical Biology,160(1):97-133, January 1993.</li>
 +
<li>http://www.partsregistry.org (October 1,2008)</li>
 +
<li>Martin Gardner. Mathematical Games: The fantastic combinations of John Conway’s new solitaire game
 +
“Life”. Scientific American 223:120-123, October 1970.</li>
 +
<li>B.L. Bassler. Small Talk: cell-to-cell communiction in bacteria. Cell, 109, 2002.</li>
 +
<li>C.H. Collins, F.H. Arnold, and J.R. Leadbetter. Directed evolution of Vibrio fischeri LuxR for increased
 +
sensitivity to a broad spectrum of acyl-homoserine lactones. Molecular Microbiology, 55, 2005.</li>
 +
<li>S. Basu, R. Mehreja, S. Thiberge, M. T. Chen, and R. Weiss. Spatiotemporal control of gene expression
 +
with pulse-generating networks. PNAS USA, 101(17):6355–6360, April 2004.</li>
 +
<li>Simbiology. Model, design, and simulate biochemical pathways. The Mathworks Inc. version 2.3
 +
(R2008a).</li>
 +
<li>Matlab. The Language of Technical Computing, The Mathworks Inc., version 7.6.0.324 (R2008a).</li>
 +
<li>M.B. Elowitz, and S. Leibler. A synthetic oscillatory network of transcriptional regulators. Nature
 +
403(6767):335-338, January 2000.</li>
 +
<li>http://openwetware.org/wiki/Griffitts:Common_media</li>
 +
<li>http://openwetware.org/wiki/TOP10_chemically_competent_cells</li>
 +
<li>http://partsregistry.org/Assembly:Standard_assembly</li>
 +
<li>http://partsregistry.org/Help:How_to_check_a_part</li>
 +
<li><a href="http://openwetware.org/wiki/IGEM:MIT/2005/Sequences_of_primers_specified">IGEM:MIT/2005/Sequences of primers specified</a></li>
 +
<li><a href="http://openwetware.org/wiki/Beta-Galactosidase_Assay_(A_better_Miller)">Beta-Galactosidase Assay (A Better Miller) on OpenWetware.org</a></li>
 +
<li>D. Endy. Foundations for engineering biology. Nature, 438:449–453, 2005.</li>
 +
<li>S. Hooshangi, S. Thiberge, and R. Weiss. Ultrasensitivity and noise propagation in a synthetic transcriptional
 +
cascade. PNAS USA, 102(10):3581–3586, 2005.</li>
 +
<li>M.A. Marchisio, and J. Stelling. Computational design of synthetic gene circuits with composable parts.
 +
Bioinformatics, 24(17):1903–1910, 2008.</li>
 +
<li><a href="https://2008.igem.org/Team:Groningen">Groningen iGEM2008 Team Wiki (October 1, 2008)</a></li>
 +
<li>U. Alon. An Introduction to Systems Biology: Design Principles of Biological Circuits. Chapman & Hall/
 +
Crc Mathematical and Computational Biology Series, Chapman & Hall/CRC, July 2006.</li>
 +
<li>S. Basu, Y. Gerchman, C.H. Collins, F.H. Arnold, and R. Weiss. A synthetic multicellular system for programmed
 +
pattern formation. Nature, 434(7037):1130–1134.</li>
 +
<li>D. Braun, S. Basu, and R. Weiss. Parameter estimation for two synthetic gene networks: a case study.
 +
Acoustics, Speech, and Signal Processing, Proceedings (ICASSP ’05), 5. IEEE International Conference,
 +
March 2005.</li>
 +
<li>J.B. Andersen, C. Sternberg, L.K. Poulsen, S.P. Bjorn, M. Givskov, and S. Molin, S. New Unstable Variants
 +
of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria. Applied and
 +
Environmental Microbiology, 64(6):2240-2246, 1998.</li>
 +
<li><a href="http://molgen.biol.rug.nl/molgen/files/VMT.pdf">University of Groningen Biological Safety Manual</a></li>
 +
</ol>
</ol>
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Revision as of 17:29, 29 October 2008

  1. J. von Neumann, and A.W. Burks. Theory of Self-Reproducing Automata. Univ. of Illinois Press, Urbana IL, 1966.
  2. S. Wolfram. Universality and complexity in cellular automata. Physica D 10:1-35, 1984.
  3. S. Sen, C. Shaw, D.R. Chowdhuri, N. Ganguly, and P.P. Chaudhuri. Cellular Automata Based Cryptosystem (CAC), ICICS ‘02. Proceedings of the 4th International Conference on Information and Communications Security, 303--314. Springer-Verlag, London, UK 2002.
  4. G.B. Ermentrout, and L. Edelstein-Keshet. Cellular Automata Approaches to Biological Modeling. Journal of Theoretical Biology,160(1):97-133, January 1993.
  5. http://www.partsregistry.org (October 1,2008)
  6. Martin Gardner. Mathematical Games: The fantastic combinations of John Conway’s new solitaire game “Life”. Scientific American 223:120-123, October 1970.
  7. B.L. Bassler. Small Talk: cell-to-cell communiction in bacteria. Cell, 109, 2002.
  8. C.H. Collins, F.H. Arnold, and J.R. Leadbetter. Directed evolution of Vibrio fischeri LuxR for increased sensitivity to a broad spectrum of acyl-homoserine lactones. Molecular Microbiology, 55, 2005.
  9. S. Basu, R. Mehreja, S. Thiberge, M. T. Chen, and R. Weiss. Spatiotemporal control of gene expression with pulse-generating networks. PNAS USA, 101(17):6355–6360, April 2004.
  10. Simbiology. Model, design, and simulate biochemical pathways. The Mathworks Inc. version 2.3 (R2008a).
  11. Matlab. The Language of Technical Computing, The Mathworks Inc., version 7.6.0.324 (R2008a).
  12. M.B. Elowitz, and S. Leibler. A synthetic oscillatory network of transcriptional regulators. Nature 403(6767):335-338, January 2000.
  13. http://openwetware.org/wiki/Griffitts:Common_media
  14. http://openwetware.org/wiki/TOP10_chemically_competent_cells
  15. http://partsregistry.org/Assembly:Standard_assembly
  16. http://partsregistry.org/Help:How_to_check_a_part
  17. IGEM:MIT/2005/Sequences of primers specified
  18. Beta-Galactosidase Assay (A Better Miller) on OpenWetware.org
  19. D. Endy. Foundations for engineering biology. Nature, 438:449–453, 2005.
  20. S. Hooshangi, S. Thiberge, and R. Weiss. Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. PNAS USA, 102(10):3581–3586, 2005.
  21. M.A. Marchisio, and J. Stelling. Computational design of synthetic gene circuits with composable parts. Bioinformatics, 24(17):1903–1910, 2008.
  22. Groningen iGEM2008 Team Wiki (October 1, 2008)
  23. U. Alon. An Introduction to Systems Biology: Design Principles of Biological Circuits. Chapman & Hall/ Crc Mathematical and Computational Biology Series, Chapman & Hall/CRC, July 2006.
  24. S. Basu, Y. Gerchman, C.H. Collins, F.H. Arnold, and R. Weiss. A synthetic multicellular system for programmed pattern formation. Nature, 434(7037):1130–1134.
  25. D. Braun, S. Basu, and R. Weiss. Parameter estimation for two synthetic gene networks: a case study. Acoustics, Speech, and Signal Processing, Proceedings (ICASSP ’05), 5. IEEE International Conference, March 2005.
  26. J.B. Andersen, C. Sternberg, L.K. Poulsen, S.P. Bjorn, M. Givskov, and S. Molin, S. New Unstable Variants of Green Fluorescent Protein for Studies of Transient Gene Expression in Bacteria. Applied and Environmental Microbiology, 64(6):2240-2246, 1998.
  27. University of Groningen Biological Safety Manual

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