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Team:Groningen/modeling files.html
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<li class="sub"><a href="https://2008.igem.org/Team:Groningen/team.html"> The Team </a></li> | <li class="sub"><a href="https://2008.igem.org/Team:Groningen/team.html"> The Team </a></li> | ||
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| - | These files where used to model the single cell interval switch:<br> | + | These files where used to model the single cell interval switch:<br></p> |
<em>Note: please rename all linked files below with the correct extension indicated in the table! They are not all text files!</em> | <em>Note: please rename all linked files below with the correct extension indicated in the table! They are not all text files!</em> | ||
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SimBiology model format.</td></tr> | SimBiology model format.</td></tr> | ||
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| - | Please refer to the readme file for further information on usage. | + | <p>Please refer to the readme file for further information on usage.</p> |
| - | + | <p>The detailed <a href="https://2008.igem.org/Team:Groningen/modeling_SingleCell.html#modelbrick">"modelbrick"</a> descriptions can be found <a href="https://static.igem.org/mediawiki/2008/f/f7/Groningen2008_Modelling_details.pdf">in this appendix.</a></p> | |
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<div class="headcontainer"><h2>Single-Cell Model Files</h2></div> | <div class="headcontainer"><h2>Single-Cell Model Files</h2></div> | ||
<p> The Matlab ".M" file implementing the spatial model <a href="https://static.igem.org/mediawiki/2008/b/b2/Groningen2008_Spatial_model.txt">can be found here</a>. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!</p> | <p> The Matlab ".M" file implementing the spatial model <a href="https://static.igem.org/mediawiki/2008/b/b2/Groningen2008_Spatial_model.txt">can be found here</a>. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!</p> | ||
Revision as of 23:23, 29 October 2008
Modeling Files
Single-Cell Model Files
These files where used to model the single cell interval switch:
| ModelBrickReadme.txt | Readme for ModelBrick Assembler |
| mba.m | MATLAB script file for automatic assembly of modelbricks. |
| modelbricks.zip | contains all parts used in .xml format. |
| partslibrary.mat | MATLAB workspace file containing all parts used in SimBiology model format. |
Please refer to the readme file for further information on usage.
The detailed "modelbrick" descriptions can be found in this appendix.
Single-Cell Model Files
The Matlab ".M" file implementing the spatial model can be found here. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!
