"
Team:Paris/constructions
From 2008.igem.org
(New page: =Model constructions: from the modelling to the characterization= Our project BacterioClock is based on an oscillating FIFO synchronised at the population level. To obtain and have prelim...) |
|||
| Line 1: | Line 1: | ||
=Model constructions: from the modelling to the characterization= | =Model constructions: from the modelling to the characterization= | ||
| - | Our project BacterioClock is based on an oscillating FIFO | + | Our project BacterioClock is based on an oscillating FIFO synchronized at the population level. To obtain and have preliminary results of this system we divided it in three "little" modules as the modeling team exposed them previously. |
*The First one aims to see the FIFO which constitute our core system. | *The First one aims to see the FIFO which constitute our core system. | ||
| - | A simple manner to see it, is to implement one class II promotor followed by a reporter gene like GFP in a bacteria strain that is able to produce the flagella. | + | A simple manner to see it, is to implement one class II promotor followed by a reporter gene like GFP in a bacteria strain that is able to produce the flagella. |
| - | By this way, we are able to see in single cell the order of the activation of pFliL then pFlgA then pFlhB and then the inactivation in the same order as a FIFO. | + | "image construction" |
| + | By this way, we are able to see in single cell the order of the activation of pFliL then pFlgA then pFlhB and then the inactivation in the same order as a FIFO will do. | ||
| + | |||
| + | These constructions are equivalent to the experiments realized by Uri Alon in the article "Using quantitative Blueprint to reprogram the Dynamics of the Flagella Gene Network" Kalir S, Alon U. Cell 2004. | ||
| + | |||
| + | We are extremely grateful for Alon U. that send us the inducible gene ''FlhDC'', and ''FliA'' in pBad18 plasmid. | ||
| + | These plasmids with our own araC/pBad-EnvZ* will allowed us to study the system in appropriate conditions that is to say in mutated strains that we have in our lab (ΔFlhD, ΔFliA, ΔFlgM, ΔEnvZ). By cotransforming in mutated strains the inducibles regulators of the class II promotors with one of this promotor associated to a fluorescent protein, we could characterize the influence of the master regulators of the flagella on their pormoter. The fluorescence is normalized to the OD<sub>600</sub> | ||
| + | For example: | ||
| + | |||
| + | "Scheme" | ||
| + | |||
| + | |||
| + | To perform such a cotransformation we take care about the ORI of each low copy plasmid which are often incompatible and so we made all our final constructions in the pSB4T5 plasmid that care the only one resistance that was not already used and the pSC101 ORI which is compatible with the ColE1. | ||
| + | |||
| + | We could see the FIFO in a more convenient manner with the assembly of two class II promotors associated to differents fluorophores. | ||
Revision as of 01:10, 30 October 2008
Model constructions: from the modelling to the characterization
Our project BacterioClock is based on an oscillating FIFO synchronized at the population level. To obtain and have preliminary results of this system we divided it in three "little" modules as the modeling team exposed them previously.
- The First one aims to see the FIFO which constitute our core system.
A simple manner to see it, is to implement one class II promotor followed by a reporter gene like GFP in a bacteria strain that is able to produce the flagella. "image construction" By this way, we are able to see in single cell the order of the activation of pFliL then pFlgA then pFlhB and then the inactivation in the same order as a FIFO will do.
These constructions are equivalent to the experiments realized by Uri Alon in the article "Using quantitative Blueprint to reprogram the Dynamics of the Flagella Gene Network" Kalir S, Alon U. Cell 2004.
We are extremely grateful for Alon U. that send us the inducible gene FlhDC, and FliA in pBad18 plasmid. These plasmids with our own araC/pBad-EnvZ* will allowed us to study the system in appropriate conditions that is to say in mutated strains that we have in our lab (ΔFlhD, ΔFliA, ΔFlgM, ΔEnvZ). By cotransforming in mutated strains the inducibles regulators of the class II promotors with one of this promotor associated to a fluorescent protein, we could characterize the influence of the master regulators of the flagella on their pormoter. The fluorescence is normalized to the OD600 For example:
"Scheme"
To perform such a cotransformation we take care about the ORI of each low copy plasmid which are often incompatible and so we made all our final constructions in the pSB4T5 plasmid that care the only one resistance that was not already used and the pSC101 ORI which is compatible with the ColE1.
We could see the FIFO in a more convenient manner with the assembly of two class II promotors associated to differents fluorophores.
