"
Team:Groningen/modeling files.html
From 2008.igem.org
(Difference between revisions)
| Line 73: | Line 73: | ||
<p>Please refer to the readme file for further information on usage.</p> | <p>Please refer to the readme file for further information on usage.</p> | ||
<p>The detailed <a href="https://2008.igem.org/Team:Groningen/modeling_SingleCell.html#modelbrick">"modelbrick"</a> descriptions can be found <a href="https://static.igem.org/mediawiki/2008/f/f7/Groningen2008_Modelling_details.pdf">in this appendix.</a></p> | <p>The detailed <a href="https://2008.igem.org/Team:Groningen/modeling_SingleCell.html#modelbrick">"modelbrick"</a> descriptions can be found <a href="https://static.igem.org/mediawiki/2008/f/f7/Groningen2008_Modelling_details.pdf">in this appendix.</a></p> | ||
| - | <div class="headcontainer"><h2> | + | <div class="headcontainer"><h2>Spatial Model Files</h2></div> |
<p> The Matlab ".M" file implementing the spatial model <a href="https://static.igem.org/mediawiki/2008/b/b2/Groningen2008_Spatial_model.txt">can be found here</a>. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!</p> | <p> The Matlab ".M" file implementing the spatial model <a href="https://static.igem.org/mediawiki/2008/b/b2/Groningen2008_Spatial_model.txt">can be found here</a>. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!</p> | ||
</div> | </div> | ||
Revision as of 01:28, 30 October 2008
Modeling Files
Single-Cell Model Files
These files where used to model the single cell interval switch:
| ModelBrickReadme.txt | Readme for ModelBrick Assembler |
| mba.m | MATLAB script file for automatic assembly of modelbricks. |
| modelbricks.zip | contains all parts used in .xml format. |
| partslibrary.mat | MATLAB workspace file containing all parts used in SimBiology model format. |
| Intervalswitch.sbproj | This SimBiology project file contains the complete, assembled, interval switch. The 'diagram overview' option shows the structure of the model. The 'model tasks - conserved cycles' option shows the flow of RNA polymerases and Ribosomes through the system as well as the dynamics of promoter states. |
Please refer to the readme file for further information on usage.
The detailed "modelbrick" descriptions can be found in this appendix.
Spatial Model Files
The Matlab ".M" file implementing the spatial model can be found here. However it is renamed as a ".txt" file for Wiki-reasons. Please rename it to "spatial_model.m" before use!
