Team:Virginia/Project

Genetic Attenuator

Transcriptional attenuation is a very promising new tool for the specification and control of genetic transcription rates. The basic mechanism is simple: stop some fraction of the polymerases before they reach the desired gene to reduce transcription (and thereby translation) of the gene. Natural terminators already serve this role in their capacity to prevent transcription of undesired DNA, but a heretofore untapped resource is the potential inefficiency of this termination. For instance, imagine a terminator that interrupts only 50% of the polymerases transcribing it. If placed between two genes, this will result in 100% more copies of mRNA corresponding to the first gene than the second in the total transcript output. Without any sophisticated empirical testing and tuning (as is often required for promoter engineering), using a tool directly out of the BioBrick toolbox, an accurate and reliable ratio of gene transcription can been established.

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A new technical standard!

BioPlastic

Making plastic a renewable resource.

Rastonia eutropha naturally produces PHB for long-term carbon storage. Taking advantage of this microbes metabolic abilities, we've codon-optimized the 3 essential genes that code for the PHB biosynthesis pathway for expression in E. coli. The enzymes that are produced are PhaA, PhaB1 and PhaC1, which take acetyl-CoA to acetoacetyl-CoA, acetoacetyl-CoA to 3-hydroxybutyryl-CoA, and 3-hydroxybutyryl-CoA to poly-3-hydroxybutyrate (PHB), respectively. Why bother synthesizing PHB? It has the potential to replace polypropylene, a petroleum derivative, as main component of plastic materials.

Adding to the Registry

More tools in the toolbox.

Over the course of our research we identified a few key areas in the registry where we felt it was lacking. Namely we saw a dearth of reporters as well as a limited number of anti-biotic resistances to work with. Expanding the scope of the registry is a key aspect of iGEM and we feel glad to contribute.

Reporters are a stable of modern biology. This year's Nobel Prize in Chemistry was awarded for the discovery of GFP. Often in biology it is hard to deduce much about the systems one is working with because proxy measurements are the only data available. Reporters take us a step closer to the action by often being able to show the exact target of interest. Diversity in reporters allowed projects such as Brainbow to be created. We have thus added two new reporters to the registry. Strongly Enhanced Blue Fluorescent Protein (SBFP2) and Orange Fluorescent Protein (OFP).

OFP in action

Anti-biotic resistance is probably the most prevalent screen in biology. Thus we have added an additional type of anti-biotic resistance to the registry, namely streptomycin resistance (aadA).