Team:UC Berkeley Tools

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About the Team

Team: UC_Berkeley_Tools

Members: Nade Sritanyaratana, Matthew Johnson, Anne Van Devender

Supervisors: Doug Densmore, Chris Anderson

The Project

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Genomics has reached the stage at which the amount of DNA sequence information in existing databases is quite large. Moreover, synthetic biology now is using these databases to catalog sequences according to their functionality and therefore creating standard biological parts which can be used to create large systems. What is needed now are flexible tools which not only permit access and modification to that data but also allow one to perform meaningful manipulation and use of that information in an intelligent and efficient way. These tools need to be useful to biologists working in a laboratory environment while leveraging the experience of the larger CAD community. This project develops a toolset called "Clotho" which provides a variety of design views and tools to aid biologists to modify existing synthetic biological systems as well as create new ones. These tools differ from current offerings in this area in that they not only provide the needed tools to manipulate designs in one complete system but also provide unique ways in which to visualize the design as well as a number of connections to both local and global part repositories.

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Notebooks

Contact Us

For any inquiries or comments, please prefix emails with [iGEM 2008 Cal Comp Team]. So, if the preferred subject of the email were "Clotho Question", then please subject the email as "[iGEM 2008 Cal Comp Team]Clotho Question". Thanks!

Nade Sritanyaratana: nadesri@berkeley.edu

Matthew Johnson: matthewjohnson(at)berkeley(dot)edu

Questions or Comments: Shoutbox

Quick question? Comment? Message here: (Thanks!)

Links

UC Berkeley Wet Team 2008 Wiki

[http://biocad-server.eecs.berkeley.edu/wiki/index.php/BioCad Doug Densmore Wiki]

[http://synberc.org/iGEM/ucb/ SynBERC iGEM Page]

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Revision as of 02:00, 11 July 2008 (view source) Logosandpathos (Talk \| contribs) (→Contact Us) ← Older edit		Revision as of 02:01, 11 July 2008 (view source) Logosandpathos (Talk \| contribs) (→Contact Us) Newer edit →
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	Nade Sritanyaratana: nadesri@berkeley.edu		Nade Sritanyaratana: nadesri@berkeley.edu
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	Matthew Johnson: matthewjohnson(at)berkeley(dot)edu		Matthew Johnson: matthewjohnson(at)berkeley(dot)edu