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Template:Team:UC Berkeley/Notebook/SC Asequencing
From 2008.igem.org
(Difference between revisions)
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| SC45 || 8//8/2008 ||Stock amplif. fimH || 1 sample || ca998 || mixed inserts || [[Amplif. fimH]] | | SC45 || 8//8/2008 ||Stock amplif. fimH || 1 sample || ca998 || mixed inserts || [[Amplif. fimH]] | ||
| + | |- | ||
| + | | <s>SC46</s> || Date || fimH || Clone # || oligo || result || file | ||
| + | |- | ||
| + | | SC47 || 8/13/2008 || sca40-1 || Clone #1 || g00101 || Perfect || file | ||
| + | |- | ||
| + | | SC48 || 8/13/2008 || sca40-4 || Clone #4 || g00101 || mixed inserts || file | ||
| + | |- | ||
| + | | SC49 || 8/13/2008 || sca41-4 || Clone #4 || g00101 || Perfect || file | ||
| + | |- | ||
| + | | SC50 || 8/13/2008 || sca42-2 || Clone #2 || g00101 || short - partial perfect || file | ||
| + | |- | ||
| + | | SC51 || 8/13/2008 || sca42-5 ??? || Clone #5 || g00101 || short-only {b1006} present || file | ||
| + | |- | ||
| + | | SC52 || 8/13/2008 || sca43-4 || Clone #4 || g00101 || || file | ||
| + | |- | ||
| + | | SC53 || Date || sca42-5 || Clone #5 || g00101 || result || file | ||
| + | |- | ||
| + | | SC54 || Date || sca43-2 || Clone #2 || oligo || result || file | ||
|- | |- | ||
| Read || Date || Description || Clone # || oligo || result || file | | Read || Date || Description || Clone # || oligo || result || file | ||
Revision as of 20:22, 13 August 2008
| Read | Date | sca # | Clone # | Oligo | Result | File |
| CC09 | 7/18/2008 | SCA15(trial 1) | Clone #1 | ca998/g00101 | Bad read | SCA15 |
| CC10 | 7/18/2008 | SCA17(trial 1) | Clone #2 | ca998/g00101 | Bad read | SCA17 |
| CC11 | 7/22/2008 | SCA18(trial 1) | Clone #4 | ca998 | Low signal | SCA18 |
| CC12 | 7/22/2008 | SCA19(trial 1) | Clone #1 | ca998 | Low signal | SCA19 |
| CC13 | 7/22/2008 | SCA18(trial 1) | Clone #4 | ca998 | Low signal | SCA18-2 |
| CC14 | 7/22/2008 | SCA19(trial 1) | Clone #1 | ca998 | Low signal | SCA19-2 |
| SC16 | 7/22/2008 | SCA16 | Clone #3 | ca998 | Bad--mixed inserts | SCA16 |
| SC17 | 7/22/2008 | SCA20 | Clone #5 | ca998/G00101 | Bad--mixed inserts | SCA20 |
| SC18 | 7/22/2008 | SCA22-1 | Clone #1 | ca998 | Perfect | SCA22 |
| SC19 | 7/22/2008 | SCA23-3 | Clone #3 | ca998 | Perfect | SCA23 |
| SC20 | 7/22/2008 | SCA24-1 | Clone #1 | ca998 | Perfect | SCA24 |
| SC21 | 7/22/2008 | SCA25-1 | Clone #1 | ca998 | Perfect | SCA25 |
| SC22 | 7/23/2008 | sca3-2 (fr. SP) | Clone #2 | ca998 | Did not work | SCA3-SP2 |
| SC23 | 7/24/2008 | sca3-PR2 | Clone #2 | ca998 | mixed inserts | SCA3-PR2 |
| SC24 | 7/24/2008 | sca15-1 (trial 2) | Clone #1 | ca998/g00101 | ca998 weird;g00101 good | SCA15-1 |
| SC25 | 7/30/2008 | sca1 T | Clone # | ca998/g00101 | 2 pt mutations | SC25 |
| SC26 | 7/30/2008 | sca2 T | Clone # | ca998 | Bad Read | SC26 |
| SC27 | 7/30/2008 | sca3 T | Clone #1 | ca998 | Bad Read | SC27 |
| SC28 | 7/30/2008 | sca4 T | Clone # | ca998 | Perfect(missing EcoRI) | SC28 |
| SC29 | 7/30/2008 | sca6 T | Clone # | ca998 | Perfect | SC29 |
| SC30 | 7/30/2008 | sca7 T | Clone # | ca998 | Perfect | SC30 |
| SC31 | 7/30/2008 | sca8 T | Clone # | ca998/g00101 | Perfect | SC31 |
| SC32 | 7/30/2008 | sca9 T | Clone # | ca998/g00101 | random sequence | SC32 |
| SC33 | 7/30/2008 | sca14 T | Clone # | ca998 | Perfect | SC33 |
| CC15 | 7/29/2008 | sca5 (pBca1256) | Clone #1 | ca998 | Perfect | SCA5-1 |
| CC16 | 7/29/2008 | sca5 (pBca1256) | Clone #2 | ca998 | Perfect | SCA5-2 |
| CC17 | 7/29/2008 | sca11 (pBca1256) | Clone #1 | ca998 | Perfect | SCA11-1 |
| CC18 | 7/29/2008 | sca11 (pBca1256) | Clone #2 | ca998 | Perfect | SCA11-2 |
| CC19 | 8/1/2008 | sca5 T | Clone #2 | ca998 | Perfect. no Bam site | SCA5 T2 |
| CC20 | 8/1/2008 | sca11 T | Clone #1 | ca998 | Perfect | SCA11 T1 |
| CC21 (CC11) | 8/3/2008 | sca5 T {<HA!} | Clone #2 | G00101 | Perfect | sca5 T |
| CC22 (CC12) | 8/3/2008 | sca11 T {<HA>} | Clone #1 | G00101 | Perfect | sca11 T |
| SC42 | 8/4/2008 | sca2-1 | Clone #1 | g00101(try) | no part...wrong | sca2-1 |
| SC43 | Date | sca3-9 | Clone #9 | ca998(&RS) | Bad Read | file |
| SC44 | 8/5/2008 | sca23-4 | Clone #4 | ca998 | Perfect | sca23-4 |
| SC45 | 8//8/2008 | Stock amplif. fimH | 1 sample | ca998 | mixed inserts | Amplif. fimH |
| | Date | fimH | Clone # | oligo | result | file |
| SC47 | 8/13/2008 | sca40-1 | Clone #1 | g00101 | Perfect | file |
| SC48 | 8/13/2008 | sca40-4 | Clone #4 | g00101 | mixed inserts | file |
| SC49 | 8/13/2008 | sca41-4 | Clone #4 | g00101 | Perfect | file |
| SC50 | 8/13/2008 | sca42-2 | Clone #2 | g00101 | short - partial perfect | file |
| SC51 | 8/13/2008 | sca42-5 ??? | Clone #5 | g00101 | short-only {b1006} present | file |
| SC52 | 8/13/2008 | sca43-4 | Clone #4 | g00101 | file | |
| SC53 | Date | sca42-5 | Clone #5 | g00101 | result | file |
| SC54 | Date | sca43-2 | Clone #2 | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
| Read | Date | Description | Clone # | oligo | result | file |
