"
Team:Paris/Modeling/f3
From 2008.igem.org
(Difference between revisions)
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| - | |(K<sub> | + | |(K<sub>19</sub>/{coef<sub>ompR</sub>}<sup>n<sub>19</sub></sup>) |
|activation constant of OmpR-pFlhDC <br> K<sub>19</sub> | |activation constant of OmpR-pFlhDC <br> K<sub>19</sub> | ||
|nM<sup>n<sub>19</sub></sup> | |nM<sup>n<sub>19</sub></sup> | ||
Revision as of 15:00, 21 August 2008
and
so the expression
gives
and
and for calculated values of the TF,
and
| param | signification | unit | value |
| [expr(pFlhDC)] | expression rate of pFlhDC with RBS E0032 | nM.s-1 | see "findparam" need for 20 + 20 measures and 5x5 measures for the SUM? |
| γGFP | dilution-degradation rate of GFP(mut3b) | s-1 | ln(2)/3600 |
| [GFP] | GFP concentration at steady-state | nM | need for 20 + 20 measures and 5x5 measures for the SUM? |
| (fluorescence) | value of the observed fluorescence | au | need for 20 + 20 measures and 5x5 measures for the SUM? |
| conversion | conversion ration between fluorescence and concentration | nM.au-1 | (1/79.429) |
| param | signification corresponding parameters in the equations | unit | value |
| β12 | production rate of FliA-pFlhDC with RBS E0032 β12 | nM.s-1 | |
| (K11/{coeffliA}n11) | activation constant of FliA-pFlhDC K11 | nMn11 | |
| n11 | complexation order of FliA-pFlhDC n11 | no dimension | |
| β2 | production rate of OmpR-pFlhDC with RBS E0032 β2 | nM.s-1 | |
| (K19/{coefompR}n19) | activation constant of OmpR-pFlhDC K19 | nMn19 | |
| n19 | complexation order of OmpR-pFlhDC n19 | no dimension |
Then, if we have time, we want to verify the expected relation
