Team:Warsaw/Calendar-Main/7 July 2008

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(Difference between revisions)
Line 14: Line 14:
1. Gradient PCR:<br>
1. Gradient PCR:<br>
template DNA pDRIVE-TAPtag - 1 µl<br>
template DNA pDRIVE-TAPtag - 1 µl<br>
-
primer APNot - 2 µl<br>
+
primer <html>
-
primer ALSac - 2µl<br>
+
<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AP+NotI_N">AP+NotI_N</a></html> - 2 µl<br>
 +
primer <html>
 +
<a href="https://2008.igem.org/Wiki/Team:Warsaw/primers#AL+SacI_N">AL+SacI_N</a></html> - 2µl<br>
Pfu buffer with Mg2+ - 5 µl<br>
Pfu buffer with Mg2+ - 5 µl<br>
10 mM dNTPs - 1 µl<br>
10 mM dNTPs - 1 µl<br>
Line 24: Line 26:
1. 94&deg;C, 3 min<br>
1. 94&deg;C, 3 min<br>
2. 94&deg;C, 30 sec<br>
2. 94&deg;C, 30 sec<br>
-
3. 62&deg;C, 45 sec<br>
+
3. 62 to 74&deg;C, 45 sec<br>
4. 72&deg;C, 45 sec<br>
4. 72&deg;C, 45 sec<br>
5. Repeat of elongation step 25X<br>
5. Repeat of elongation step 25X<br>

Revision as of 18:03, 26 September 2008

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Preparation of constructs with OmpA protein fusions
1. Digestion of confirmed clones of pET15b+OmpA_alpha and pET15b+OmpA_omega with NdeI and BamHI
2. Digestion of pACYC177 plasmid with NdeI and BamHI, dephosphorylation with CIAP
3. Gel electrophoresis and digested plasmids and gel-out of proper bands
4. Overnight ligation of pACYC177 and OmpA_alpha
5. Overnight ligation of pACYC177 and OmpA_omega

Preparation of construct pKS with A protein
1. Gradient PCR:
template DNA pDRIVE-TAPtag - 1 µl
primer AP+NotI_N - 2 µl
primer AL+SacI_N - 2µl
Pfu buffer with Mg2+ - 5 µl
10 mM dNTPs - 1 µl
Pfu Turbo polymerase - 0,5 µl
H2O - 38,5 µl

Program:
1. 94°C, 3 min
2. 94°C, 30 sec
3. 62 to 74°C, 45 sec
4. 72°C, 45 sec
5. Repeat of elongation step 25X
6. 72°C, 10 min
7. Hold at 4 °C

2. Gel electrophoresis of PCR product
3. Isolation of proper band (470bp) from the gel
4. Overnight digestion of isolated PCR product and pKS vector with NotI and SacI; to the reaction mix with pKS added 0,5 µl of CIAP.