Team:Warsaw/Calendar-Main/19 August 2008

From 2008.igem.org

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<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>  
<li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation</a> of plasmids from bacterial cultures inoculated on previous day (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a>). </li>  
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">  dephosphorylation</a> with CIAP.</li>
<li> <a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pKSII+A>pKS+A</a> and <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart+Z</a> with SacI and NotI (BamHI buffer), <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart_Z>pGeneart</a><a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing">  dephosphorylation</a> with CIAP.</li>
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<li> Gel electrophoresis of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
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<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) of digested plasmids and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of proper bands (470 bp for protein A lane and 2570 for pGeneart)  </li>
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
<li> Overnight <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#ligation">ligation</a> of <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart and A</a>. </li>
</ol></p>
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<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmids</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart+A</a> and <A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
<ol><li> <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#plasmid_DNA_isolation">Isolation of plasmids</a> from cultures inocluated on <a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/21_August_2008">previous day</a> (<A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pGeneart-A>pGeneart+A</a> and <A href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA-alpha</a>). </li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
<li><a href="https://2008.igem.org/Wiki/Team:Warsaw/igem_notebook.htm#digest">Digest</a> <a href=https://2008.igem.org/Wiki/Team:Warsaw/vectors/pET15b%2BOmpA-alpha>pET15b+OmpA_alpha</a> with NdeI and NotI (Orange buffer) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#removing"> dephosphorylation with CIAP</a>.</li>
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<li> Gel electrophoresis and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>
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<li> Gel electrophoresis (<a href="https://2008.igem.org/Team:Warsaw/Calendar-Main/19_August_2008#fig1">Fig. 1</a>) and <a href="https://2008.igem.org/wiki/index.php?title=Wiki/Team:Warsaw/protocols#DNA_isolation_from_agarose_gel">gel-out</a> of 6300 bp band. </li> </ol>

Revision as of 17:40, 24 October 2008

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Tests for ampicillin resistance given by protein added to medium

Piotr

Inoculation of TOP10 carrying OmpA_A_alpha, OmpA_Adelta_alpha, OmpA_Adelta_omega, OmpA_A_omega, OmpA_omega_Adelta, OmpA_alpha, OmpA_omega and OmpA_omega_A_alpha to LB with inductor (0.25 mM IPTG) and kanamycin.

Cloning of protein A DNA to GeneArt plasmid

Antoni

  1. Isolation of plasmids from bacterial cultures inoculated on previous day (pKS+A and pGeneart+Z).
  2. Digest of pKS+A and pGeneart+Z with SacI and NotI (BamHI buffer), pGeneart dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1) of digested plasmids and gel-out of proper bands (470 bp for protein A lane and 2570 for pGeneart)
  4. Overnight ligation of pGeneart and A.

Preparation of pET15b plasmid for cloning of protein A DNA to pET15b+OmpA-alpha plasmid

Antoni

  1. Isolation of plasmids from cultures inocluated on previous day (pGeneart+A and pET15b+OmpA-alpha).
  2. Digest pET15b+OmpA_alpha with NdeI and NotI (Orange buffer) and dephosphorylation with CIAP.
  3. Gel electrophoresis (Fig. 1) and gel-out of 6300 bp band.

Cloning of alpha to pACYC177+OmpA_A_omega and pACYC177+OmpA_Z_omega

Michał K.

  1. Clean-up of overnight digest reaction.
  2. Ligation of digested vectors from 14 August and alpha DNA fragment.
  3. Electroporation of E. coli TOP10 with ligations products.
  4. Transformants plating on LB + kanamycine.


Fig. 1.Digest product - pGeneart+Z (lanes 1-3), pKSII+A (4-6), pET15b+OmpA-A (8-10). Lane 7 - GeneRuler™ DNA Ladder Mix