Template:Team:UC Berkeley/Notebook/Molly sequencing

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Revision as of 22:52, 18 June 2008

Molly's Sequencing Log

Read	Date	Plasmid	Clone #	Oligo	Result	File
MEA001	06/15/08	pBca1256-K112200	1	ca998	Bad read	MEA001
MEA001	06/18/08	pBca1256-K112200	1	ca998	Point mutation changing Asn to Lys	MEA001
MEA002	06/15/08	pBca1256-K112201	1	ca998	Point mutation changing Asn to Lys	MEA002
MEA002	06/18/08	pBca1256-K112201	1	ca998	Point mutation changing Asn to Lys	MEA002
MEA003	06/15/08	pBca1256-K112202	1	ca998	Perfect	MEA003
MEA003	06/18/08	pBca1256-K112202	1	ca998	Bad Read	MEA003
MEA004	06/15/08	pBca1256-K112203	1	ca998	Perfect	MEA004
MEA005	06/15/08	pBca1256-K112204	1	ca998	Point mutation changing Asn to Lys	MEA005
MEA006	06/15/08	pBca1256-K112207	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA006	MEA006	06/18/08	pBca1256-K112207	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA006
MEA007	06/15/08	pBca1256-K112208	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA007
MEA007	06/18/08	pBca1256-K112208	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA007
MEA008	06/15/08	pBca1256-K112209	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA008
MEA008	06/18/08	pBca1256-K112209	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA008
MEA009	06/15/08	pBca1256-K112210	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA009
MEA009	06/18/08	pBca1256-K112210	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA009
MEA010	06/15/08	pBca1256-K112211	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA010
MEA010	06/18/08	pBca1256-K112211	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA010
MEA011	06/15/08	pBca1256-K112212	1	ca998	Partial read (long part) with silent mutation from AGG to AGA	MEA011
MEA011	06/18/08	pBca1256-K112212	1	G00101	Bad reverse read, but good part was perfect with silent mutation from AGG to AGA	MEA011
MEA012	06/15/08	pBca1256-K112213	1	ca998	Perfect	MEA012
MEA013	06/15/08	pBca1256-K112214	1	ca998	Perfect	MEA013
MEA014	06/15/08	pBca1256-K112215	1	ca998	Perfect	MEA014
MEA015	06/15/08	pBca1256-K112216	1	ca998	Bad read in the beginning, re-sequence & pick new colony	MEA015
MEA015	06/18/08	pBca1256-K112216	1	ca998	This one was perfect except it shows a deletion of A in EcoRI site, but that's probably just a problem with the sequencing data	MEA015
MEA016	06/15/08	pBca1256-K112217	1	ca998	This looks like the sequencing file was switched with that for MEA017	MEA016
MEA016	06/18/08	pBca1256-K112217	1	ca998	This looks like the sequencing file was switched with that for MEA017	MEA016
MEA017	06/15/08	pBca1256-K112218	1	ca998	This looks like the sequencing file was switched with that for MEA016	MEA017
MEA017	06/18/08	pBca1256-K112218	1	ca998	This looks like the sequencing file was switched with that for MEA016	MEA017
MEA018	06/15/08	pBca1256-K112221	1	ca998	Perfect	MEA018
MEA019	06/15/08	pBca1256-K112222	1	ca998	Perfect	MEA019
MEA020	06/15/08	pBca1256-K112225	1	ca998	Perfect	MEA020
MEA021	06/15/08	pBca1256-K112226	1	ca998	Perfect	MEA021
MEA022	06/15/08	pBca1256-K112227	1	ca998	Perfect	MEA022
MEA023	06/15/08	pBca1256-K112228	1	ca998	This finch file aligns with K112229...	MEA023
MEA024	06/15/08	pBca1256-K112229	1	ca998	Bad read, re-sequence	MEA024
MEA025	06/15/08	pBca1256-K112230	1	ca998	This part aligns with K112228...	MEA025
MEA026	Date	Plasmid	Clone #	Oligo	Result	MEA026
MEA027	Date	Plasmid	Clone #	Oligo	Result	MEA027
MEA028	Date	Plasmid	Clone #	Oligo	Result	MEA028
MEA029	Date	Plasmid	Clone #	Oligo	Result	MEA029
MEA030	Date	Plasmid	Clone #	Oligo	Result	MEA030
MEA031	Date	Plasmid	Clone #	Oligo	Result	MEA031
MEA032	Date	Plasmid	Clone #	Oligo	Result	MEA032
MEA033	Date	Plasmid	Clone #	Oligo	Result	MEA033
MEA034	Date	Plasmid	Clone #	Oligo	Result	MEA034
MEA035	Date	Plasmid	Clone #	Oligo	Result	MEA035
MEA036	Date	Plasmid	Clone #	Oligo	Result	MEA036
MEA037	Date	Plasmid	Clone #	Oligo	Result	MEA037
MEA038	Date	Plasmid	Clone #	Oligo	Result	MEA038
MEA039	Date	Plasmid	Clone #	Oligo	Result	MEA039
MEA040	Date	Plasmid	Clone #	Oligo	Result	MEA040
MEA041	Date	Plasmid	Clone #	Oligo	Result	MEA041
MEA042	Date	Plasmid	Clone #	Oligo	Result	MEA042
MEA043	Date	Plasmid	Clone #	Oligo	Result	MEA043
MEA044	Date	Plasmid	Clone #	Oligo	Result	MEA044
MEA045	Date	Plasmid	Clone #	Oligo	Result	MEA045
MEA046	Date	Plasmid	Clone #	Oligo	Result	MEA046
MEA047	Date	Plasmid	Clone #	Oligo	Result	MEA047
MEA048	Date	Plasmid	Clone #	Oligo	Result	MEA048
MEA049	Date	Plasmid	Clone #	Oligo	Result	MEA049
MEA050	Date	Plasmid	Clone #	Oligo	Result	MEA050

@@ Line 53: / Line 53: @@
 |-
 |	MEA015	||	06/15/08	||	pBca1256-K112216	||	1	||	ca998	||	Bad read in the beginning, re-sequence & pick new colony	||	 [[Team:UC Berkeley/Notebook/MEA/MEA015 | MEA015]]
+|-
+|	MEA015	||	06/18/08	||	pBca1256-K112216	||	1	||	ca998	||	This one was perfect except it shows a deletion of A in EcoRI site, but that's probably just a problem with the sequencing data	||	 [[Team:UC Berkeley/Notebook/MEA/MEA015 | MEA015]]
 |-
 |	MEA016	||	06/15/08	||	pBca1256-K112217	||	1	||	ca998	||	This looks like the sequencing file was switched with that for MEA017	||	 [[Team:UC Berkeley/Notebook/MEA/MEA016 | MEA016]]