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Team:Utah State/Project
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most efficient reporter genes, and the best promoter sequences that | most efficient reporter genes, and the best promoter sequences that | ||
would allow our reporter to indicate when PHB production was maximized. | would allow our reporter to indicate when PHB production was maximized. | ||
| + | |||
| + | == Project Objectives == | ||
| + | |||
| + | '''''DESIGN''''' PHB-reporter constructs (promoter region, reporter region, and PhaCAB cassette) | ||
| + | |||
| + | '''''BUILD''''' PHB-reporter constructs | ||
| + | |||
| + | '''''TEST''''' for functionality of constructs | ||
== Introduction == | == Introduction == | ||
=== Polyhydroxybutyrate === | === Polyhydroxybutyrate === | ||
| + | [[Image:PHB1.jpg|250px|right]] | ||
| + | Polyhydroxyalkanoates are a class of over 80 polyesters synthesized by more than 300 microorganisms that exhibit material properties similar to those of petrochemical plastics (Lee, 1999; Lee, 1996). Polyhydroxybutyrate (PHB), the most prevalent PHA, has been of particular interest in commercial and medical applications because of its high tensile strength, biodegradability, and biocompatibility with human tissues (Lee, 1996b; Abe, 1992; Williams 2002). Concerns with the increasingly limited supply of fossil fuels and public anxiety over landfills oversaturated with non-biodegradable materials have also stimulated bioplastic research (Moran, 2006; Ojumu, 2004). PHA research has increased in an effort to understand its potential. It has been used for specialized medical applications, including bone fixation, drug delivery systems and degradable sutures (Knowles, 1993: Kose, 2004; Holmes, 1985: Chen, 2005). | ||
| + | |||
| + | |||
=== PHB Metabolic Pathways === | === PHB Metabolic Pathways === | ||
| + | [[Image:PHBCassette.jpg|900px]] | ||
| + | [[Image:PHBpathway.jpg|300px|left]] | ||
| + | The PHB cassette | ||
| + | |||
=== Problems with PHB === | === Problems with PHB === | ||
| + | '''1. COST''' | ||
| + | |||
| + | The current cost of industrial PHA production is estimated to be triple that of petrochemical plastics, which limits its widespread use. | ||
| + | |||
| + | '''2. PRODUCTION EFFICIENCY''' | ||
=== Green Fluorescent Protein === | === Green Fluorescent Protein === | ||
| - | The Green Fluorescent Protein (GFP) used primarily used in this project was GFP E0240 plasmid from the newer iGEM paper. | + | GFP (Green Fluorescent Protein) is a protein originally isolated from the jellyfish Aequorea victoria, fluorescing when exposed to ultraviolet light. GFP is used as a tag, attached to proteins as a marker. Only those cells in which the tagged gene is expressed will fluoresce. In such a way GFP acts as a positive marker of tranformation. In our laboratory, GFP is used as an expression reporter of PHB. The Green Fluorescent Protein (GFP) used primarily used in this project was GFP E0240 plasmid from the newer iGEM paper. |
== Methods == | == Methods == | ||
Revision as of 14:01, 28 October 2008
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Abstract
The Utah State University iGEM team project is focused on creating an efficient system for production and monitoring PHA production in microorganisms. One goal of our research is to develop and optimize a method, using fluorescent proteins, for the detection of maximum product yield of polyhydroxybutyrate (PHB, a bioplastic) in recombinant E. coli and in Cupriavidus necator. In order to develop an optimal PHB detection system, we focused on the identification of the most efficient reporter genes, and the best promoter sequences that would allow our reporter to indicate when PHB production was maximized.
Project Objectives
DESIGN PHB-reporter constructs (promoter region, reporter region, and PhaCAB cassette)
BUILD PHB-reporter constructs
TEST for functionality of constructs
Introduction
Polyhydroxybutyrate
Polyhydroxyalkanoates are a class of over 80 polyesters synthesized by more than 300 microorganisms that exhibit material properties similar to those of petrochemical plastics (Lee, 1999; Lee, 1996). Polyhydroxybutyrate (PHB), the most prevalent PHA, has been of particular interest in commercial and medical applications because of its high tensile strength, biodegradability, and biocompatibility with human tissues (Lee, 1996b; Abe, 1992; Williams 2002). Concerns with the increasingly limited supply of fossil fuels and public anxiety over landfills oversaturated with non-biodegradable materials have also stimulated bioplastic research (Moran, 2006; Ojumu, 2004). PHA research has increased in an effort to understand its potential. It has been used for specialized medical applications, including bone fixation, drug delivery systems and degradable sutures (Knowles, 1993: Kose, 2004; Holmes, 1985: Chen, 2005).
PHB Metabolic Pathways
The PHB cassette
Problems with PHB
1. COST
The current cost of industrial PHA production is estimated to be triple that of petrochemical plastics, which limits its widespread use.
2. PRODUCTION EFFICIENCY
Green Fluorescent Protein
GFP (Green Fluorescent Protein) is a protein originally isolated from the jellyfish Aequorea victoria, fluorescing when exposed to ultraviolet light. GFP is used as a tag, attached to proteins as a marker. Only those cells in which the tagged gene is expressed will fluoresce. In such a way GFP acts as a positive marker of tranformation. In our laboratory, GFP is used as an expression reporter of PHB. The Green Fluorescent Protein (GFP) used primarily used in this project was GFP E0240 plasmid from the newer iGEM paper.
